Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5i09
         (722 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013147-1|AAH13147.1|  188|Homo sapiens mitochondrial ribosomal...    38   0.048
AB049649-1|BAB40854.1|  188|Homo sapiens mitochondrial ribosomal...    38   0.048
BC110545-1|AAI10546.1| 1037|Homo sapiens huntingtin interacting ...    30   9.6  

>BC013147-1|AAH13147.1|  188|Homo sapiens mitochondrial ribosomal
           protein L32 protein.
          Length = 188

 Score = 37.5 bits (83), Expect = 0.048
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
 Frame = +2

Query: 254 FGQPPKELALAVS----VNQQPKPTPKAFSIHDLIGDGFLLAVPKFRRTVEKRLNRKFGW 421
           F  PP   ALAV       +    T  +     L+   F +A PK RRT+E    R+   
Sbjct: 38  FPSPPWGPALAVQGPAMFTEPANDTSGSKENSSLLDSIFWMAAPKNRRTIEVNRCRRRN- 96

Query: 422 PEYVWKPFVPKTNLKTCHECGHHHEQGRLCA 514
           P+ + K    K N+  C ECGH  ++  LCA
Sbjct: 97  PQKLIKV---KNNIDVCPECGHLKQKHVLCA 124



 Score = 31.1 bits (67), Expect = 4.2
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 528 KGKRIVEMKKERPQWFSKN 584
           +GKRI+E  ++RP WF++N
Sbjct: 170 QGKRIIERDRKRPSWFTQN 188


>AB049649-1|BAB40854.1|  188|Homo sapiens mitochondrial ribosomal
           protein L32 (L32mt) protein.
          Length = 188

 Score = 37.5 bits (83), Expect = 0.048
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
 Frame = +2

Query: 254 FGQPPKELALAVS----VNQQPKPTPKAFSIHDLIGDGFLLAVPKFRRTVEKRLNRKFGW 421
           F  PP   ALAV       +    T  +     L+   F +A PK RRT+E    R+   
Sbjct: 38  FPSPPWGPALAVQGPAMFTEPANDTSGSKENSSLLDSIFWMAAPKNRRTIEVNRCRRRN- 96

Query: 422 PEYVWKPFVPKTNLKTCHECGHHHEQGRLCA 514
           P+ + K    K N+  C ECGH  ++  LCA
Sbjct: 97  PQKLIKV---KNNIDVCPECGHLKQKHVLCA 124



 Score = 31.1 bits (67), Expect = 4.2
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 528 KGKRIVEMKKERPQWFSKN 584
           +GKRI+E  ++RP WF++N
Sbjct: 170 QGKRIIERDRKRPSWFTQN 188


>BC110545-1|AAI10546.1| 1037|Homo sapiens huntingtin interacting
           protein 1 protein.
          Length = 1037

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +2

Query: 281 LAVSVNQQPKPTPKAFSIHDLIGDGFLLAV-PKFRRTVEKRLNRKFGWPEYVWKPFVPKT 457
           +A S+ Q P P PK  S    +G G   A    F RT    +N+     E      V + 
Sbjct: 4   MASSMKQVPNPLPKVLSRRG-VGAGLEAAERESFERTQTVSINKAINTQEVA----VKEK 58

Query: 458 NLKTCHECGHHHEQG 502
           + +TC   G HHE+G
Sbjct: 59  HARTC-ILGTHHEKG 72


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,426,495
Number of Sequences: 237096
Number of extensions: 2014206
Number of successful extensions: 3983
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3977
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)