Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5i09
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L09634-3|AAA27965.1| 168|Caenorhabditis elegans Hypothetical pr... 41 8e-04
AL032630-10|CAA21566.1| 396|Caenorhabditis elegans Hypothetical... 31 1.1
AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical ... 28 5.9
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 7.8
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 28 7.8
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 28 7.8
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 7.8
>L09634-3|AAA27965.1| 168|Caenorhabditis elegans Hypothetical
protein C30C11.1 protein.
Length = 168
Score = 41.1 bits (92), Expect = 8e-04
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Frame = +2
Query: 263 PPKELALAVSVNQQPKPT----PKAF-SIHDLIGD-GFLLAVPKFRRTVEKRLNRKFGWP 424
PP A V P T P + S+ ++I D + VPK+R + K++ RKF +
Sbjct: 13 PPPSFGFACDVGAHPSSTAQNLPMTYGSVREMIDDFSIVFGVPKYRTSKPKKVTRKFSFT 72
Query: 425 EYVWKPFVPKTNLKTCHECGHHHEQGRLC 511
+ P NL TC C + H +C
Sbjct: 73 RLL----QPIDNLVTCPACSNIHPSDTIC 97
Score = 35.1 bits (77), Expect = 0.051
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 528 KGKRIVEMKKERPQWFSKNLLQK 596
KGKR++E++KERP WF K L++
Sbjct: 146 KGKRVLEIEKERPTWFKKLTLKE 168
>AL032630-10|CAA21566.1| 396|Caenorhabditis elegans Hypothetical
protein Y62H9A.10 protein.
Length = 396
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -2
Query: 541 ILLPFQNSFCT*SALFVVVTTLMACF*ISFRYKWLPNIFRPPKFPIQSLFNCSSKL-WYR 365
+LLP + + C F +VT+ +A + + L PPKF FN SS L W+R
Sbjct: 125 VLLPVRYNKCGPGYTFFIVTSPVAVSLLGYCIHLLAISLLPPKFVDNICFNFSSVLPWFR 184
>AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical
protein Y34D9A.1 protein.
Length = 413
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 498 KADYVQKEFWKGKRIVEMKKERPQWFSKNLLQK 596
K DYV++ W VE KK+ P W L++
Sbjct: 369 KLDYVKEPKWVDTDYVENKKKLPAWLHAKKLER 401
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 446 VPKTNLKTCHECGHHHEQGRLCAKG 520
VP TN C +C H +Q CA G
Sbjct: 742 VPDTNNTVCKKCHHECDQNYHCANG 766
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = -3
Query: 360 KNPSPIKS*MEKALGVGFGC*LTETANASSFGG*PKRLNRIDLSKFFKCWTTCMNLGNIL 181
+N + I M K G +ET N G RL RI +F + WT +N ++L
Sbjct: 2531 RNKTQILDGMGKLWSFILGIMASETKNWRLVVG---RLGRIGHGEF-RAWTHLLNKTSLL 2586
Query: 180 RMGNNLKDM 154
R +LKD+
Sbjct: 2587 RYSGSLKDI 2595
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = -3
Query: 360 KNPSPIKS*MEKALGVGFGC*LTETANASSFGG*PKRLNRIDLSKFFKCWTTCMNLGNIL 181
+N + I M K G +ET N G RL RI +F + WT +N ++L
Sbjct: 2531 RNKTQILDGMGKLWSFILGIMASETKNWRLVVG---RLGRIGHGEF-RAWTHLLNKTSLL 2586
Query: 180 RMGNNLKDM 154
R +LKD+
Sbjct: 2587 RYSGSLKDI 2595
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 446 VPKTNLKTCHECGHHHEQGRLCAKG 520
VP TN C +C H +Q CA G
Sbjct: 742 VPDTNNTVCKKCHHECDQNYHCANG 766
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 446 VPKTNLKTCHECGHHHEQGRLCAKG 520
VP TN C +C H +Q CA G
Sbjct: 793 VPDTNNTVCKKCHHECDQNYHCANG 817
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = -3
Query: 360 KNPSPIKS*MEKALGVGFGC*LTETANASSFGG*PKRLNRIDLSKFFKCWTTCMNLGNIL 181
+N + I M K G +ET N G RL RI +F + WT +N ++L
Sbjct: 2531 RNKTQILDGMGKLWSFILGIMASETKNWRLVVG---RLGRIGHGEF-RAWTHLLNKTSLL 2586
Query: 180 RMGNNLKDM 154
R +LKD+
Sbjct: 2587 RYSGSLKDI 2595
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,259,183
Number of Sequences: 27780
Number of extensions: 333504
Number of successful extensions: 822
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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