Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5i03
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    36   0.004
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    30   0.29 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.7  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   2.7  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.6  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   4.8  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   6.3  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    25   8.3  

>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 161 DDYPLINGNAYEGRGAY-GPSYDFLSHGASFNKKYGKSVNTKETLEDKKDDNDLWEAQA 334
           ++ P I  +++E      GP+Y+      S +K++G ++N  + +ED  DDN   E QA
Sbjct: 50  NESPKILDSSFENSNPQDGPNYEDFDFMGSIHKEFGNNINEMDDMEDVSDDNLPEEEQA 108


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 269  SVNTKETLEDKKDDNDLWEA--QAAFLGPNLWDKTLPYDPDLKYVDLDEFLSE 421
            S+NT ETLE     N++ E+  Q      ++W+KT+   P L+ +    ++SE
Sbjct: 966  SINTNETLESTSIVNEIEESAVQTKSYSESMWNKTVTMFPSLQELP-QNYMSE 1017



 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 398 DLDEFLSENGMPGEGLGSTHLGGSAFGPALGLXTPITKRERSPSPSDCMSPDTINPPL 571
           ++ EF + +G+P +GL    +   +   A       ++ E    PSD    D INP L
Sbjct: 61  EMREFFNFDGLPDQGLNLPSIAPPSLSHASSPNLSNSQDEAECLPSD-RQQDYINPSL 117


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 75   NTGLRLDTRTLSGRRAGPAHT 13
            NTG +LD     G R GP HT
Sbjct: 1677 NTGAKLDRSLSLGSRRGPGHT 1697


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 287 TLEDKKDDNDLWEAQAAFLGPNLWDK-TLPYDPDLKYVDL 403
           +LE KK+D D W ++ A+LG  L  K    Y  D K+V L
Sbjct: 5   SLEVKKNDKDPW-SKTAYLGGRLVSKIPAVYSNDNKFVFL 43


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 116 SLTDTPLKTYIGRHDDDYPLINGNAYEGRGAY 211
           SL +TP+K   GR +  YPLI     + +  +
Sbjct: 697 SLLNTPVKILFGRTEYTYPLIEHEVLDSKNYF 728


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 233 SHGASFNKKYGKSVNTKETLEDKKDDNDLWEAQAAFLGPNLWDKTLPY 376
           S  A+F+  + KS++ + T+   K  NDL  A    L  NLW ++LP+
Sbjct: 619 SKSANFDFSFLKSLDLQPTITLGK--NDLLNA---ILSQNLWFRSLPF 661


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 489 PSAGPNAXPPRCVLPRPSPGMPFSDR 412
           P+A P+  PPR  +P P PG   S +
Sbjct: 581 PNASPSVIPPR--VPTPVPGRTLSPK 604


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 380 PDLKYVDLDEFLSENGMPGEGLGSTHLGGSAFGPALGLXTPITK 511
           PDL   DL E+L   G+P     + H+ GSA   A    T + K
Sbjct: 367 PDLLATDLAEYLVRKGLPFR--QTHHISGSAVRMAEERNTTLDK 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,909
Number of Sequences: 5004
Number of extensions: 35371
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)