Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5i03
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445... 30 1.6
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582... 29 2.1
04_03_0779 - 19507771-19507992,19508678-19508990,19509235-195092... 29 2.8
09_04_0032 - 13953323-13955269 29 3.7
11_06_0196 + 21144094-21144483 28 4.9
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 28 4.9
11_06_0610 - 25449085-25453284 28 6.5
07_01_1094 + 10050988-10051177,10052128-10052591 28 6.5
05_07_0278 + 28911722-28911934,28912154-28913055,28913142-289135... 28 6.5
04_04_1608 - 34753321-34753332,34753434-34753628,34753868-347539... 27 8.5
>02_05_1312 +
35642687-35642923,35643712-35643831,35644468-35644534,
35644673-35644694,35645053-35645152,35645282-35645414,
35645483-35645517,35645708-35646409,35646789-35647121,
35647337-35647601,35647665-35647999,35648105-35648177,
35648271-35648356,35648479-35648598,35648674-35648741,
35648825-35648882
Length = 917
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 286 DARRQEG*QRPLGGAGRLLGSQPVGQDPALRPRSQVRG 399
+A+R+ G QR G GR + PA+RP + RG
Sbjct: 17 EAKRKSGKQRGSGAKGRRRNGDRAFRPPAMRPEEEGRG 54
>01_01_0754 -
5823076-5823089,5823797-5823911,5823992-5824045,
5825629-5827251
Length = 601
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = -2
Query: 150 PMYVFSGVSVREGDDLSL-SLIIITYN----TGLRLDTRTLSGRRAGPAH 16
P+Y+FSG S + GD+ SL S++ + +N +G + + +S R A AH
Sbjct: 488 PLYIFSGTSDQVGDEYSLVSVVKMGFNERRISGRKQEFSYISLRNAQSAH 537
>04_03_0779 -
19507771-19507992,19508678-19508990,19509235-19509296,
19509845-19509904,19510260-19510367,19510452-19510561,
19510656-19510701,19510812-19510884,19510970-19511100,
19511270-19511356,19511871-19511968,19512849-19512971,
19513091-19513286
Length = 542
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 479 PALGLXTPITKRERSPSPSDCMSPDTINPPLS-PADS 586
P L P +R RSPSPS S NP S PA++
Sbjct: 29 PLAALAAPRRRRRRSPSPSPAPSDSDSNPASSAPANA 65
>09_04_0032 - 13953323-13955269
Length = 648
Score = 28.7 bits (61), Expect = 3.7
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Frame = +2
Query: 311 NDLWEAQAAFLGPNLWDKTLPYDPDLKYVDLDEFLSEN----GMPGEGLGSTHLGGSAFG 478
N L +L N + TLP D DL + L + + +P G S G
Sbjct: 163 NKLRRLATLYLENNGLNGTLPADLDLPKLQLFNVSNNDQLTGAVPASLAGKPASAFSGTG 222
Query: 479 PALGLXTPITKRERSPSPSDCMSPDTINPPLSPADSXFS 595
G +P T PSPS SP PP + DS S
Sbjct: 223 LCGGPLSPCTNTS-PPSPSPSPSPPIPPPPAASQDSKSS 260
>11_06_0196 + 21144094-21144483
Length = 129
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +2
Query: 479 PALGLXTPITKRERSPSPSDCMSPDTINPPLSPA 580
PA + P + RSPSPS SP +++PP+S A
Sbjct: 92 PAAAVAKPPWPQPRSPSPSMPRSP-SLSPPVSAA 124
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 416 SENGMPGEGLGSTHLGGSAFGPAL---GLXTPITKR 514
+EN + GS+HLG GP L G TP+TK+
Sbjct: 243 AENTLSNRNNGSSHLGHMQAGPNLGSDGKNTPLTKK 278
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 515 ERSPSPSDCMSPDTINPPLSP 577
E+SP P + SP T+ P +SP
Sbjct: 871 EKSPPPPETKSPPTLTPEISP 891
>07_01_1094 + 10050988-10051177,10052128-10052591
Length = 217
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -2
Query: 531 GEGERSRLVMGVCRPSAGPNAXPPRCVLPRPSPGMPFSDRNSSRSTYLR 385
GE RS+ G+ A A PP CV P F NS T L+
Sbjct: 9 GEMRRSQRADGLAAVLAIGTANPPNCVTQEEFPDFYFRVTNSDHLTALK 57
>05_07_0278 +
28911722-28911934,28912154-28913055,28913142-28913581,
28913628-28913955,28914101-28914743
Length = 841
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 326 AQAAFLGPNLWDKTLPYDPDLKYVDLDE 409
A A G WD T Y+ D +YVDLD+
Sbjct: 554 ASGAGAGGFRWDVTTIYNVDRRYVDLDK 581
>04_04_1608 -
34753321-34753332,34753434-34753628,34753868-34753972,
34754176-34754219,34754645-34754700,34755986-34756146
Length = 190
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 338 FLGPNLWDKTLPYDPDLKYVDLDEFLSENGMPGEGLGSTHLGGSAFGPALGL 493
FL N W++ P DP K+ + +F+ N E +G + + LG+
Sbjct: 80 FLNSN-WEEDFPDDPSGKFEEFKDFIRSNFEICEWIGLSVVAAQVLSIVLGM 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,107,451
Number of Sequences: 37544
Number of extensions: 300219
Number of successful extensions: 1248
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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