Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5i03
         (595 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    25   2.4  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   3.2  

>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 410 FLSENGMPGEGLGSTH 457
           F ++NG P +G G+TH
Sbjct: 60  FSAQNGWPTDGFGTTH 75


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 486 SAGPNAXPPR-CVLPRPSPGMPFSDRNSSRSTYLRSGS*GRVLSHRL 349
           S  P   PPR   +P P PG+   ++++       +GS G+   H L
Sbjct: 374 SPNPARAPPRNFTMPGPGPGIGEREKSNPSRPPSVAGSYGKPNDHEL 420



 Score = 22.6 bits (46), Expect = 9.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 355 VGQDPALRPRSQVRGPR 405
           +GQ P +RP + + GPR
Sbjct: 260 MGQPPPIRPPNPMGGPR 276


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,583
Number of Sequences: 2352
Number of extensions: 9546
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57188952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)