Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5i03
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical ...    33   0.12 
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    31   0.82 
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        31   0.82 
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical
           protein Y47H10A.1 protein.
          Length = 702

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +2

Query: 158 DDDYPLINGNAYEGRGAYGPSYDFLSHGASFNKKYGKSVNTKETLEDKKDDNDLWEAQAA 337
           DD  P +NG         G  +     G    K Y K + T E L D   +  LW+A A+
Sbjct: 320 DDRLPTVNGTLCYMSSPGGSEF----WGPLLEKAYAKLLGTYEHLNDPYTEQALWQASAS 375

Query: 338 FLG 346
           F G
Sbjct: 376 FTG 378


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 158 DDDYPLI---NGNAYEGRGAYGPSYDFLSHGASFNKKYGKSVNTKE 286
           ++D P++   NGN     G Y   +  LS    + K++G S N+KE
Sbjct: 297 EEDVPVLSPLNGNVIFSSGRYNVCFSLLSFSNIYAKQHGDSFNSKE 342


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 158 DDDYPLI---NGNAYEGRGAYGPSYDFLSHGASFNKKYGKSVNTKE 286
           ++D P++   NGN     G Y   +  LS    + K++G S N+KE
Sbjct: 172 EEDVPVLSPLNGNVIFSSGRYNVCFSLLSFSNIYAKQHGDSFNSKE 217


>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
           protein K09C4.10 protein.
          Length = 1035

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/67 (20%), Positives = 28/67 (41%)
 Frame = +2

Query: 101 DRSSPSLTDTPLKTYIGRHDDDYPLINGNAYEGRGAYGPSYDFLSHGASFNKKYGKSVNT 280
           D SSPS     L+  +    +  P ++GN+     +Y P +D   +   + +   K+  +
Sbjct: 479 DNSSPSPRAQRLEQNLATSANTIPCLSGNSENSENSYAPKHDNAENVGEWKEVVSKATTS 538

Query: 281 KETLEDK 301
               + K
Sbjct: 539 NSNKKGK 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,934,481
Number of Sequences: 27780
Number of extensions: 222168
Number of successful extensions: 788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)