Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5i03
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.0  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   3.9  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   3.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   9.1  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 233 SHGASFNKKYGKSVNTKETLEDKKDDNDLWE 325
           SHG++  K    S++T++ L+D  ++N  WE
Sbjct: 181 SHGSNEIKL--NSLDTEQILDDMYNNNTEWE 209


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 522 ERSRLVMGVCRPSAG 478
           ER++ VMG C P++G
Sbjct: 105 ERAQSVMGKCLPTSG 119


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 522 ERSRLVMGVCRPSAG 478
           ER++ VMG C P++G
Sbjct: 105 ERAQSVMGKCLPTSG 119


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 402 RSTYLRSGS*GRVLSHRLGPKKAACASQ 319
           RST+L+     RV S R   ++ +C SQ
Sbjct: 386 RSTHLKVSGINRVGSTRRPSRRNSCESQ 413


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 497 TPITKRERSPSPSDCM 544
           TP  K+ + P P++C+
Sbjct: 26  TPRRKKNKKPLPTECV 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,159
Number of Sequences: 438
Number of extensions: 3105
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)