Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5h18
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical ...    31   0.26 
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    29   1.0  
Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    28   2.4  
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    28   2.4  
Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical p...    27   4.2  
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical...    27   5.5  
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    27   7.3  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    27   7.3  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    27   7.3  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    27   7.3  
Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    26   9.7  
AF016418-8|AAK18897.1|  330|Caenorhabditis elegans Serpentine re...    26   9.7  
AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical ...    26   9.7  

>AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical
           protein C13A2.9 protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 64  GLYNSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTY 183
           GL+   S   IFN   L A++LL+ N +K    K I+N +
Sbjct: 12  GLFRKCSFRRIFNFAFLGASILLLYNFMKPNTSKAIFNAF 51


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +1

Query: 37  CLVAQKINLGLYNSASAEF-IFNIMHLTANVLLVPNALKKRDVKYIYNTYLKNY-SVIEG 210
           C   + INL  +N    +F IF I+H  +NVLLV          +IY  + + Y +V+  
Sbjct: 260 CTSVKFINLFSHNYVQFQFVIFKIIHHISNVLLV---FYSASTFFIYLIFSEKYRNVLST 316

Query: 211 AMCC-NGDCLAVVVLDRNQLQNT 276
            + C N D L V    R   + T
Sbjct: 317 CVTCRNTDELTVSSRGRQNTKTT 339


>Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical
           protein Y57G11B.7 protein.
          Length = 215

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 307 CILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 206
           CILNF  LP    A     T   PN+ HC+  +L
Sbjct: 3   CILNFLLLPLVVLAQSSCDTDGIPNHLHCSIKNL 36


>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +1

Query: 124 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 291
           + L  N L+ R V  I+NT L +   ++      GD L   + +L+  +L N ++  L  
Sbjct: 92  ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151

Query: 292 -ESLEYTSDNVELLCKKVCVIV 354
             ++    +N  L  +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +1

Query: 124 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVL-- 291
           + L  N L+ R V  I+NT L +   ++      GD L   + +L+  +L N ++  L  
Sbjct: 92  ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151

Query: 292 -ESLEYTSDNVELLCKKVCVIV 354
             ++    +N  L  +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173


>Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical
           protein F35C5.11 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 3   IECEECGVTHKMPGCAKNKPGSI*LGVGRVY 95
           I+C +CG   K+P  AKN    + + V  +Y
Sbjct: 21  IKCHQCGGAEKIPKFAKNALAKLNISVDSLY 51


>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
            W09D10.2 protein.
          Length = 1335

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 210  TFNYTVIFQICIINVFHVPLF 148
            TF + ++ Q+ I+N FH+ LF
Sbjct: 1176 TFGHLLVTQLIIVNTFHLALF 1196


>U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical
           protein D1009.1a protein.
          Length = 655

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 180 CIINVFHVPLFERVRNKQYISRQMH 106
           CI N+  +P+F+  R K  IS ++H
Sbjct: 183 CITNINLLPMFKAAREKNLISDEIH 207


>AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical
           protein Y54E10A.16a protein.
          Length = 427

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 207 FNYTVIFQICIINVFHVPLF-ERVRNKQYISRQMHNVKN 94
           FN+  +  IC +     P F ER RNKQYI  +M+ V N
Sbjct: 359 FNHYKVKSICDV----WPDFNERERNKQYIKTEMNQVPN 393


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical protein
            R09A8.1 protein.
          Length = 1095

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 268  QNTDMEVLESLEYTSDNVELLCKKVCVIVD 357
            +N  M   + L+ +  ++ L C KVCVI D
Sbjct: 1003 ENASMSGRQPLDTSRKHMFLFCNKVCVITD 1032


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 304 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 206
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 66  VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 98


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 304 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 206
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 83  VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 115


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 304 ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 206
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 195 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 227


>Z71181-4|CAA94897.1|  486|Caenorhabditis elegans Hypothetical
           protein K07C5.4 protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
 Frame = +1

Query: 235 LAVVVLDRNQL---QNTDMEVLESLEYTSD 315
           LAV +LDRN++   +N + E+LE L+  S+
Sbjct: 216 LAVAILDRNKMAENENLENEILEILDNDSE 245


>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical protein
            K02C4.3 protein.
          Length = 1307

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -2

Query: 324  FNVVTSVF*TFQHFHVRVLQLISVQHHNGQTIAIATHRTFNYTVIFQICIIN 169
            F+ +T +    QH   + LQLI ++ H  +             V+  +CII+
Sbjct: 1144 FSTITMIKLIMQHMASKTLQLIDMEFHLSKNERRVRFEDIIREVVSSVCIIH 1195


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = -1

Query: 385 NFFGNTCCNY-QLSH-ILFCITIQRCH*CILNFPTLP--CPCFAADFGPTPQRPNNRHCN 218
           +F GN   N  QL+H I   +   R +  + N  ++P   P F+ADF    Q  NN   N
Sbjct: 72  SFNGNPSMNGDQLNHSINQSMNAARANRNVFNSSSIPPTAPVFSADFRQNSQTRNNSSWN 131

Query: 217 TSHLQL 200
             +L +
Sbjct: 132 QRNLSV 137


>AF016418-8|AAK18897.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein169 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 250 TPQRPNNRHCNTSHLQLHCNFSNMYYKCISRP 155
           TP +  N       L L C FS+ Y+ C++ P
Sbjct: 41  TPSKMQNVRNTMFLLHLVCAFSDFYFSCLAIP 72


>AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical
           protein T21G5.2 protein.
          Length = 109

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -2

Query: 423 FFFIIKFGIYLYTIFLVILVVIINYHTYFFA*QFNVVTSVF*TFQHFHVRVLQL 262
           F F+I+F I+ Y      L V+ NY  +       V+ S F  F  F   + QL
Sbjct: 30  FIFLIQFVIFTYIHIFSYLCVLFNYFLFIDLSISTVIVS-FSRFIKFQTNLRQL 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,914,717
Number of Sequences: 27780
Number of extensions: 242271
Number of successful extensions: 709
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)