Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5h13
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   1.4  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   4.1  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.5  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    24   7.2  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    24   9.5  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    24   9.5  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    24   9.5  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 162  QSHTMSIRCKLIHHPCAAYHIK 97
            +S T+++   L+H+P + YHI+
Sbjct: 1251 KSETVTVHYDLLHNPASCYHIR 1272


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 156 GTVLLTDHFYKYFKYVRPQIQASKAAAEQELLSEGSSEKI 275
           G     DH  +   ++RP + +   AA  EL S  SS  +
Sbjct: 219 GRTYYVDHNTRSTTWIRPNLSSVAGAAAAELHSSASSANV 258


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 329 TFSLLKQTLKYYINPPLHNF 270
           TFS ++  LK+ +N P+H++
Sbjct: 65  TFSKVRDALKFRLNGPIHHW 84


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 166 RTVPYNVNPMQTNTPPLCSLSYKALRD 86
           + + Y+V+P  TN+    SL+Y++ R+
Sbjct: 117 QAMSYSVSPTSTNSSVATSLNYQSSRE 143


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 339 NYI-YIFTIKTNIKILHKSSFT*FSLKNLLTKALVQQLLWML 217
           +YI Y +T  T  +ILH S      L + +TK +V++  ++L
Sbjct: 288 DYIPYTYTALTKEEILHASHPRACKLLDQITKIMVEETAFLL 329


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 90  RNALYDKLHKGGVLVCIGLTLYGTVLLTDHFYKYFKYVR 206
           R +  DKL+  GV+  +        + ++H Y  FKY++
Sbjct: 526 RKSFRDKLYNAGVVTVLATQKGVRKIGSEHPYYEFKYLK 564


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 44  NSHFYPF*YHEEIRI 88
           NSH YPF Y+ E+ I
Sbjct: 502 NSHRYPFLYYPEVYI 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,601
Number of Sequences: 5004
Number of extensions: 31913
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)