Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5h04
         (749 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7QXE5 Cluster: GLP_14_50443_48920; n=1; Giardia lambli...    34   4.3  
UniRef50_A0EGQ6 Cluster: Chromosome undetermined scaffold_95, wh...    33   7.5  

>UniRef50_Q7QXE5 Cluster: GLP_14_50443_48920; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_14_50443_48920 - Giardia lamblia
           ATCC 50803
          Length = 507

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +2

Query: 338 VNDGSEYIVRRSQILDK-LRALLKNWSILPTILRSIVITFKN*WIDKQSDLEYEED 502
           VN    Y V  SQ LDK L ++L+N   LP+I  +I +  +    + +SD EYEED
Sbjct: 448 VNGSIAYTVYPSQDLDKNLNSVLEN---LPSICPAIYVNAEEARDESESDTEYEED 500


>UniRef50_A0EGQ6 Cluster: Chromosome undetermined scaffold_95, whole
            genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_95, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2826

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -3

Query: 720  ISNISYILTISPVKFFYFSHKISSFIVSNFFVTCAVVETINSL 592
            ISN+ ++L       FY S+K    I+ NF +T ++++ I+SL
Sbjct: 1041 ISNLGFVLDADQHFIFYNSNKKIDLILKNFTITQSILQNIDSL 1083


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 632,585,466
Number of Sequences: 1657284
Number of extensions: 11752516
Number of successful extensions: 26450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26433
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)