Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5h04
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    29   0.54 
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    27   2.9  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   3.8  
SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine N-methyltran...    26   6.6  

>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -2

Query: 217 YLANISD*LSPYSAGRYIYCRYIHPFPKVVK 125
           +L  + D L P++AG ++Y  Y+  FP++++
Sbjct: 392 FLLQLEDKLLPFTAGGFLYIAYLGVFPELLE 422


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/43 (23%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -3

Query: 726 FFISNISYILTISPVKFFYFSHKISSFIV-SNFFVTCAVVETI 601
           F+ + +++   +  +++F ++HK+S+F+V ++ F    +  TI
Sbjct: 177 FYEATLAFASKLHGMRWFMYTHKVSAFLVFTSLFWFTGITSTI 219


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 424 WQYRPILQ*CSQFVQNLRSSYDIFGPVINGTLSKRSEKANTDQK 293
           W Y  + +    F+QN+ S  +I    I  +LS +++ A T +K
Sbjct: 492 WLYNHLQENIEDFLQNIGSLLNISAATIGVSLSSQNKSAPTAKK 535


>SPBC337.16 |cho1||phosphatidyl-N-methylethanolamine
           N-methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 672 YFSHKISSFIVSNFFVTCAVVETINSL 592
           YFS  ++ F ++N F+ CAV   +N L
Sbjct: 21  YFSLNMAIFEINNSFLICAVSIALNPL 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,822,513
Number of Sequences: 5004
Number of extensions: 56199
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)