Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5h04
         (749 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73678-1|CAA98022.1|  726|Homo sapiens plakophilin 1 protein.          30   7.7  
Z34974-1|CAA84426.1|  726|Homo sapiens plakophilin protein.            30   7.7  
X79293-1|CAA55881.1|  725|Homo sapiens band-6-protein protein.         30   7.7  
BC114571-1|AAI14572.1|  726|Homo sapiens plakophilin 1 (ectoderm...    30   7.7  

>Z73678-1|CAA98022.1|  726|Homo sapiens plakophilin 1 protein.
          Length = 726

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +2

Query: 419 LPTILRSIVITFKN*WIDKQSDLEYEEDKPN*LVTIANLTKGLSSIEKGSQV*KRTNYNE 598
           LP +   ++I F   W D  S++  E   P          + LSS + G Q     NY+ 
Sbjct: 372 LPVLADRVIIPFSG-WCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT--MRNYSG 428

Query: 599 LIVSTTAQV 625
           LI S  A V
Sbjct: 429 LIDSLMAYV 437


>Z34974-1|CAA84426.1|  726|Homo sapiens plakophilin protein.
          Length = 726

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +2

Query: 419 LPTILRSIVITFKN*WIDKQSDLEYEEDKPN*LVTIANLTKGLSSIEKGSQV*KRTNYNE 598
           LP +   ++I F   W D  S++  E   P          + LSS + G Q     NY+ 
Sbjct: 372 LPVLADRVIIPFSG-WCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT--MRNYSG 428

Query: 599 LIVSTTAQV 625
           LI S  A V
Sbjct: 429 LIDSLMAYV 437


>X79293-1|CAA55881.1|  725|Homo sapiens band-6-protein protein.
          Length = 725

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +2

Query: 419 LPTILRSIVITFKN*WIDKQSDLEYEEDKPN*LVTIANLTKGLSSIEKGSQV*KRTNYNE 598
           LP +   ++I F   W D  S++  E   P          + LSS + G Q     NY+ 
Sbjct: 371 LPVLADRVIIPFSG-WCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT--MRNYSG 427

Query: 599 LIVSTTAQV 625
           LI S  A V
Sbjct: 428 LIDSLMAYV 436


>BC114571-1|AAI14572.1|  726|Homo sapiens plakophilin 1 (ectodermal
           dysplasia/skin fragility syndrome) protein.
          Length = 726

 Score = 30.3 bits (65), Expect = 7.7
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = +2

Query: 419 LPTILRSIVITFKN*WIDKQSDLEYEEDKPN*LVTIANLTKGLSSIEKGSQV*KRTNYNE 598
           LP +   ++I F   W D  S++  E   P          + LSS + G Q     NY+ 
Sbjct: 372 LPVLADRVIIPFSG-WCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT--MRNYSG 428

Query: 599 LIVSTTAQV 625
           LI S  A V
Sbjct: 429 LIDSLMAYV 437


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,085,593
Number of Sequences: 237096
Number of extensions: 1623022
Number of successful extensions: 2337
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2337
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)