Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5g23
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0678 + 21868038-21868161,21868256-21868587                       29   3.7  
08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651...    28   4.9  
01_06_1037 + 33990358-33991263                                         28   6.5  
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    27   8.5  
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    27   8.5  

>12_02_0678 + 21868038-21868161,21868256-21868587
          Length = 151

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 94  NPNTGVWLLAETETGFALLCSCLRPGLVT 8
           +P  G  L AE E G  +L SC  P LVT
Sbjct: 59  DPKAGPALAAEAENGSMMLWSCAPPKLVT 87


>08_02_0087 +
           12163706-12163757,12164877-12164961,12165039-12165107,
           12165757-12165869,12167570-12167681,12167784-12167927,
           12169222-12169396,12169482-12169595,12169734-12169775,
           12171093-12171193,12171515-12171623
          Length = 371

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 253 RCVWSTASKFCDIRVYCL 306
           RC WSTAS+ CD+ V  L
Sbjct: 337 RCSWSTASRGCDVVVSAL 354


>01_06_1037 + 33990358-33991263
          Length = 301

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 90  PTRVCGCWPKLKLVSLFCAVAYGP 19
           P R+ G WP L  +  FC  A GP
Sbjct: 117 PGRIVGGWPALAKMLFFCCGAAGP 140


>08_02_1453 -
           27199228-27200579,27200712-27202646,27202905-27202966,
           27203525-27203545,27204305-27204344,27204345-27204792,
           27204866-27204964,27205071-27205394,27205446-27205574,
           27205657-27205875,27205976-27206194,27206436-27206669,
           27206773-27206943,27207466-27207577,27207955-27208010,
           27208083-27208181,27208901-27209134,27209258-27209311,
           27209363-27209422
          Length = 1955

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -2

Query: 353 QHGRAAH*TAVRNNNRRQYTRMSQNFDAVLHTQRLQSVPRRISQLPVV*RRYNSQDA 183
           Q  RA H TA  +  ++Q  R         H Q+LQ V   +++  V   +  +QD+
Sbjct: 453 QATRAEHLTATAHGKQQQQQRFPSVVSESTHEQKLQVVESNVTEHLVYNEQQKAQDS 509


>08_02_1426 +
           27009720-27010787,27011846-27012517,27012999-27013793,
           27014914-27014943,27018095-27019987
          Length = 1485

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = -1

Query: 192 SRCVAMTAKNRRSLFEREKPTAWLWIENAPDRVTPTRVCGCWPKLKLVSLFCAVAYG 22
           +RC AM  K  R++   E+    +   N  D++      GC  K +++S+      G
Sbjct: 635 TRCTAMVPKRSRTVVAAEEAQLMIGRRNEKDKLIKMLDSGCDAKHRVISVISVWGMG 691


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,601,777
Number of Sequences: 37544
Number of extensions: 319482
Number of successful extensions: 893
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)