Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5g14
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    27   2.1  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    26   6.3  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   8.3  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   8.3  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   8.3  

>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 644 PLLLRLIYAIHCSLNNFSLYFHLLV 718
           PL+LRL + +   L +F+L  HLLV
Sbjct: 15  PLVLRLFFLVVFGLYSFTLILHLLV 39


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 503 SCARAALPASDGPATPSSGRPTVRGAFTHDRHSSTAS 613
           +CA   +PA+D     +  RP +  AF +D H   A+
Sbjct: 22  ACAAPVMPATDSDIAHAGIRPELDNAF-YDSHGEAAT 57


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 394 IYHELSFYSDLNSERNLSDYCRY 462
           ++H +S   DL+S   LSDY R+
Sbjct: 500 LHHSISESEDLSSASTLSDYFRF 522


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 380 WFNCGLSGALRCSILNLTSR 321
           WFN G  G +  +ILNL+ R
Sbjct: 418 WFNLGSHGLILANILNLSLR 437


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 547 PQQWEAYGTWRLHTRPP--LQHRQLLYKRSALSTATSTSPYLCNSL 678
           P Q E Y + R +   P  LQ++    ++   S+A  T+P  C+SL
Sbjct: 374 PMQVENYASSRNYPANPFFLQNQSTSQQQPERSSAVKTTPMKCSSL 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,404
Number of Sequences: 5004
Number of extensions: 52417
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)