Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5g14
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 32 0.40
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601... 31 1.2
10_06_0146 + 11230357-11230364,11230847-11230893,11231535-112316... 29 3.7
09_03_0006 + 11426346-11426420,11426733-11427452 29 4.9
07_01_0565 + 4188387-4190570 29 4.9
04_04_0542 - 26104362-26104607,26104788-26105130,26107176-26107663 29 4.9
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 28 6.5
02_04_0369 + 22420876-22421118 28 6.5
12_02_0030 + 12469707-12469902,12470337-12470658,12472208-124722... 28 8.6
10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167... 28 8.6
03_05_0615 + 26137785-26138593,26139307-26141368 28 8.6
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +2
Query: 503 SCARAALPASDGPATPSSGRPTVR 574
S ARA +PAS P TP PTVR
Sbjct: 134 SAARATVPASASPVTPQESTPTVR 157
>02_05_0968 +
33156585-33156941,33158510-33159902,33160035-33160118,
33160216-33160265
Length = 627
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 509 ARAALPASDGPATPSSGRPTVRGAFTHDRHSSTASCSTSEAPCP 640
AR AL + + P P+S RPT GA +H T +T+ AP P
Sbjct: 165 ARRAL-SQEPPPPPTSERPTTAGAGSHRVARVTGGGATTTAPKP 207
>10_06_0146 +
11230357-11230364,11230847-11230893,11231535-11231642,
11231789-11231828,11231995-11232757
Length = 321
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = -3
Query: 116 LYNPISFSASTAKKSQGNLLIL 51
+Y+P+SF+ S++K S GNL IL
Sbjct: 27 VYSPLSFNLSSSKTSGGNLKIL 48
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 513 GLRCPHRTAPRPPAVGGLRY 572
G RCP +AP PP G LR+
Sbjct: 114 GHRCPDSSAPSPPQPGALRW 133
>07_01_0565 + 4188387-4190570
Length = 727
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 536 GPATPSSGRPTVRGAFTHDRHSSTASCSTSEAP 634
G PS RPTVRG D ++TA+ S P
Sbjct: 24 GHRRPSPHRPTVRGGVFSDLRATTAASSQPRPP 56
>04_04_0542 - 26104362-26104607,26104788-26105130,26107176-26107663
Length = 358
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = -1
Query: 253 PFRRHNYGIIRHSAPDLNVVSCQHV--GLQFSRHSTANGTRGSPTARIFIIRSVFQ 92
PF +G++ H+ D V CQ GL + S R P A + I +FQ
Sbjct: 222 PFAADTFGLVPHTDSDFLTVLCQDQVGGLHLMKDSRWVAVRPRPDALVVNIGDLFQ 277
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 498 PIPVHGLRCPHRTAPRPPAVGGLRYVAP 581
P+P H + PH P PP R VAP
Sbjct: 66 PVPRHHRKRPHVAPPLPPPSSSERQVAP 93
>02_04_0369 + 22420876-22421118
Length = 80
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 167 ELQSDMLTRYNVKVRRAVPDYAIIMSSKRYLDQERIRYLDPIYVRMMVMA 316
EL + RY KVR + DY +R +D++ Y++ + R V A
Sbjct: 30 ELSGEWPARYGSKVRSSDEDYGAWWVGERDVDRKASDYINSFHQRKQVAA 79
>12_02_0030 +
12469707-12469902,12470337-12470658,12472208-12472245,
12472486-12473573
Length = 547
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = -1
Query: 241 HNYGIIRHSAPDLNVVSCQHVGLQFSRHSTANGTRGSPTARIFIIRSVFQR---RRPKNR 71
H Y ++ +A V C+H ++ H+T R S T RI + QR RP+ R
Sbjct: 24 HPYRVVNSAANRRYTVKCEHARCKWKVHTT---KRSSGTRRISWVGERRQRSDEARPERR 80
Query: 70 RE 65
R+
Sbjct: 81 RQ 82
>10_01_0140 -
1674305-1674586,1674683-1674838,1675676-1676622,
1678976-1679054,1679168-1679207,1679580-1679767,
1679869-1680024,1680752-1681713,1681866-1681914
Length = 952
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 480 HNVFE*PIPVHGLRCPHRTAPRPPAVGGLRYVAPSH 587
H +F+ P+ R P R PP G R +AP+H
Sbjct: 22 HYLFD-ETPLRRARLPARAMEAPPVKSGWRVMAPAH 56
>03_05_0615 + 26137785-26138593,26139307-26141368
Length = 956
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 614 CSTSEAPCPLPLLLRLIYAIH 676
CS+SE+ CP P L +L+ + H
Sbjct: 736 CSSSESDCPFPHLQKLVLSNH 756
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,321,592
Number of Sequences: 37544
Number of extensions: 380578
Number of successful extensions: 1192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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