Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5g12
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.95 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   2.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.8  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   6.7  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 106 ETYDELETPPINLPTNSAPTPDLPTTVPMEP 14
           +TY+ LE+   N PT+ A  P L   VP EP
Sbjct: 72  QTYENLESISKNEPTSEASKPLLNELVPEEP 102


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 106 ETYDELETPPINLPTNSAPTPDLPTTVPMEPNN 8
           +T  E+  PP ++ +N A +P  PT+V  +P++
Sbjct: 465 QTSREVAPPPSSINSNRAASPFRPTSVSPQPSS 497


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 88   ETPPINLPTNSAPTPDLPTTVPMEP 14
            + PP+ LP+  AP   +P+T P  P
Sbjct: 1020 KAPPVPLPSADAPPIPVPSTAPPVP 1044



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 88   ETPPINLPTNSAPTPDLPTTVPMEPNN 8
            + PPI +P+ + P P +PT+ P  P +
Sbjct: 1030 DAPPIPVPSTAPPVP-IPTSTPPVPKS 1055


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 82  PPINLPTNSAPTPDLPTTVPM 20
           P +N+  + +P P+LP TVP+
Sbjct: 231 PDLNVNVDLSPFPNLPATVPI 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,965,036
Number of Sequences: 5004
Number of extensions: 58133
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)