Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5g12
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735...    28   7.0  
06_03_0905 + 25843547-25844314                                         28   9.2  

>02_04_0656 -
           24769069-24770814,24771552-24771608,24773307-24773582,
           24773675-24773965
          Length = 789

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 9   LFGSMGTVVGKSGVGALLVGKLIGGVSNSSYVSCMR 116
           L+ S G V   +G G LL G  +GG S  ++ +C++
Sbjct: 332 LYESGGFVTTMNGGGLLLAGSTVGGGSAVNWSACLK 367


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 85  TPPINLPTNSAPTPDLPTTVPMEP 14
           TPP+  PT     P  PTT P  P
Sbjct: 141 TPPVTYPTPPVTYPTPPTTTPCPP 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,711,513
Number of Sequences: 37544
Number of extensions: 375943
Number of successful extensions: 936
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)