Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5g12
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL132852-3|CAN86966.1|  249|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    28   8.2  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    28   8.2  

>Z81568-3|CAB04592.1|  643|Caenorhabditis elegans Hypothetical
           protein K08E3.4 protein.
          Length = 643

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 142 PMISRVERIRMQETYDELETPPIN--LPTNSAPTPDLPTTVPMEP 14
           PM+ + E ++   +YD  E PP     PT  APTP +    P EP
Sbjct: 446 PMVYKPEAMKPAVSYDAYEEPPAEPAPPTFLAPTPVI-APPPPEP 489


>AL132852-3|CAN86966.1|  249|Caenorhabditis elegans Hypothetical
           protein Y95D11A.3 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 121 RIRMQETYDELETPPINLPTNSAPTPDLPTTV-PMEPNNKY 2
           +++  E  D++E    ++P+ S+    LP+TV P++PN  Y
Sbjct: 85  QLKNNEEIDDVEYIDQSVPSTSSMMTSLPSTVAPVQPNTYY 125


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 287 NALLLHGRNRQDGGTYPCGLTRGPTTCKLFP 195
           +A L+ GRN++ GGT  CG    P  C   P
Sbjct: 65  DASLIFGRNKRSGGT--CGCGAQPNNCPAGP 93


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 287 NALLLHGRNRQDGGTYPCGLTRGPTTCKLFP 195
           +A L+ GRN++ GGT  CG    P  C   P
Sbjct: 65  DASLIFGRNKRSGGT--CGCGAQPNNCPAGP 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,888
Number of Sequences: 27780
Number of extensions: 332745
Number of successful extensions: 845
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)