Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5g12
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.44 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.44 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 314 QRLPHPSNRNALL-LHGRNRQDGGTYPCGLTR 222
           ++LP    ++ LL L+G NR+D G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -2

Query: 281  LLLHGRNRQDGGTYPCGLTRGPTTCKL 201
            L+L     QDGG Y C +       KL
Sbjct: 1369 LMLSNLQSQDGGDYTCQVENAQGNDKL 1395


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 314 QRLPHPSNRNALL-LHGRNRQDGGTYPCGLTR 222
           ++LP    ++ LL L+G NR+D G Y C + R
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRR 403



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -2

Query: 281  LLLHGRNRQDGGTYPCGLTRGPTTCKL 201
            L+L     QDGG Y C +       KL
Sbjct: 1365 LMLSNLQSQDGGDYTCQVENAQGNDKL 1391


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 97  DELETPPINLPTNSAPTPD-LPTTVPM 20
           D + TPP + P +  P+PD L   +P+
Sbjct: 432 DPILTPPSSNPVSPVPSPDPLDLAIPV 458


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 671 NFRTSEKLNKYLITYKFNKTNK 736
           NF   + +  YLI +  NK  K
Sbjct: 295 NFNNDDDIKSYLIQFFANKNQK 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,949
Number of Sequences: 438
Number of extensions: 4727
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)