Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5g06
(728 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 341 8e-93
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 166 6e-40
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 164 2e-39
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 161 2e-38
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 160 3e-38
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 155 1e-36
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 154 2e-36
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 150 3e-35
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 141 2e-32
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 138 1e-31
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 137 2e-31
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 136 5e-31
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 126 6e-28
UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physali... 124 2e-27
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 120 3e-26
UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l... 88 2e-16
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 60 7e-08
UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein... 50 6e-05
UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep: Rep... 48 3e-04
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 44 0.003
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 43 0.007
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 42 0.012
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 41 0.027
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 38 0.19
UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep: Repl... 38 0.19
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 38 0.33
UniRef50_Q1WAJ5 Cluster: 27 kDa protein; n=1; White ash mosaic v... 36 1.3
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 35 1.8
UniRef50_Q54EF8 Cluster: Gelsolin-related protein; n=1; Dictyost... 35 2.3
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 34 4.1
UniRef50_A4E4Z5 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 33 5.4
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 33 5.4
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 33 5.4
UniRef50_Q94J61 Cluster: Putative uncharacterized protein P0468H... 33 7.2
UniRef50_A4RF10 Cluster: Putative uncharacterized protein; n=1; ... 33 7.2
UniRef50_A4QTP3 Cluster: Putative uncharacterized protein; n=4; ... 33 7.2
UniRef50_A6F1T3 Cluster: Chemotaxis protein histidine kinase and... 33 9.5
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 341 bits (839), Expect = 8e-93
Identities = 163/191 (85%), Positives = 163/191 (85%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI
Sbjct: 1557 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 1616
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
RAPR DDRTLPDKIASYLSEFVVGHSLGD FWTLLPADQVIYQSALFDFFC
Sbjct: 1617 RAPRALLAKLVLALDDRTLPDKIASYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFC 1676
Query: 363 RECSKEQKLALKIGEVPELLCQTMLSLGFSWLSRPLYXXXXXXXXXXXXXXXXFAPLFSD 542
RECSKEQKLALKIGEVPE LCQTMLSLGFSWLSRPLY FAPLFSD
Sbjct: 1677 RECSKEQKLALKIGEVPEHLCQTMLSLGFSWLSRPLYALLDRTARLRLLARTRFAPLFSD 1736
Query: 543 PSVEGVLQLDF 575
PSVEGVLQLDF
Sbjct: 1737 PSVEGVLQLDF 1747
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 166 bits (403), Expect = 6e-40
Identities = 82/183 (44%), Positives = 106/183 (57%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
+Y + + VSGDDS++ P +W A+ LL+L FK E ++ LFCGYY+GPAGAI
Sbjct: 1583 KYLVLDHPIMVSGDDSVIGGNPTVSRNWPAIEKLLALRFKTESTKHPLFCGYYVGPAGAI 1642
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
R+P DD ++ DK+ASYLSEF +GHSLG FW LLP DQV YQSA++DFFC
Sbjct: 1643 RSPITLFAKIMSAVDDLSIDDKLASYLSEFAIGHSLGHDFWDLLPIDQVPYQSAVYDFFC 1702
Query: 363 RECSKEQKLALKIGEVPELLCQTMLSLGFSWLSRPLYXXXXXXXXXXXXXXXXFAPLFSD 542
R S+EQK L IGEVP+ + ++ S + SR LY F D
Sbjct: 1703 RHASREQKQILNIGEVPDTVLSSIAS-HLRFASRALYCLLPSSVRRALTSKKTVTDAFED 1761
Query: 543 PSV 551
P V
Sbjct: 1762 PDV 1764
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 164 bits (399), Expect = 2e-39
Identities = 81/151 (53%), Positives = 95/151 (62%)
Frame = +3
Query: 9 DITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRA 188
D V +SGDD +SPPPP P W + +LSL FK E R GLFCGYYLGPAGA+R+
Sbjct: 154 DPEVHAVLISGDDLDISPPPPVRPTWPILEAMLSLRFKTEVSRYGLFCGYYLGPAGAVRS 213
Query: 189 PRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRE 368
P DD ++ DK ASYLSEF VGHSLG WTLLP +QV YQSA FDFFCR
Sbjct: 214 PLALFAKLIIAVDDGSIEDKKASYLSEFAVGHSLGQDMWTLLPENQVPYQSANFDFFCRN 273
Query: 369 CSKEQKLALKIGEVPELLCQTMLSLGFSWLS 461
C KLAL+IG P+L L+L + L+
Sbjct: 274 CPPSWKLALRIGS-PDLSFLDSLNLATTHLT 303
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 161 bits (391), Expect = 2e-38
Identities = 73/157 (46%), Positives = 96/157 (61%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
EY + + + VSGDDSL+ PP W A++P+L+LTFKKE R FCGYY+G GA+
Sbjct: 1586 EYAVGSTPLMVSGDDSLLDSEPPVRDQWSAIAPMLALTFKKERGRYATFCGYYVGFTGAV 1645
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
R+P DD ++ DK+ +YL+EF VGHS GD FWT+LP + V YQSA FDFFC
Sbjct: 1646 RSPPALFAKLMIAVDDGSISDKLIAYLTEFTVGHSSGDAFWTILPVEAVPYQSACFDFFC 1705
Query: 363 RECSKEQKLALKIGEVPELLCQTMLSLGFSWLSRPLY 473
R + K+ L++GE PE L G W S +Y
Sbjct: 1706 RRAPAQAKVMLRLGEAPESLLSLAFE-GLKWASHSVY 1741
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 160 bits (389), Expect = 3e-38
Identities = 78/157 (49%), Positives = 103/157 (65%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
+Y + V VSGDDSLV PP +P W A++PL +L K E GLFCGY++GPAGA+
Sbjct: 1761 QYLLHRTPVLVSGDDSLVDRVPPMNPSWPALAPLFALKPKPETSPFGLFCGYFVGPAGAV 1820
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
RAPR +D +LP+KIASY++EF VG SLGD W+L+P + VIYQSA FD C
Sbjct: 1821 RAPRALFAKLAIALEDGSLPEKIASYVAEFSVGQSLGDSLWSLIPPELVIYQSACFDLIC 1880
Query: 363 RECSKEQKLALKIGEVPELLCQTMLSLGFSWLSRPLY 473
R S + KLAL++GEVP+ + L +L+RPL+
Sbjct: 1881 RHASPQLKLALRLGEVPD-WGSLLSQLKLRFLTRPLF 1916
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 155 bits (376), Expect = 1e-36
Identities = 76/157 (48%), Positives = 96/157 (61%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
EY + + VSGDDSL+ PP +P W AV PLL+L FKKE R G FCGYY+G G I
Sbjct: 1659 EYLVGSTPCMVSGDDSLLGREPPRNPIWQAVKPLLALRFKKERTRYGEFCGYYVGCEGCI 1718
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
R+P DD T+ +K+ SY +EF +GHSLGD FW LLP D V +QSA+FDFFC
Sbjct: 1719 RSPMALFAKLMVCVDDGTIEEKMISYATEFSIGHSLGDAFWNLLPIDAVPFQSAVFDFFC 1778
Query: 363 RECSKEQKLALKIGEVPELLCQTMLSLGFSWLSRPLY 473
R ++ K+ K+G V L +LS +WLS Y
Sbjct: 1779 RHAPEDVKVMFKLGRVEVSLFSHLLS-KLTWLSYSSY 1814
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 154 bits (374), Expect = 2e-36
Identities = 75/157 (47%), Positives = 93/157 (59%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
EY VSGDDSL+ PP P+W A+ PLL+L FKKE FCGYY G +
Sbjct: 1627 EYAAAHVPTMVSGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYYASRVGCV 1686
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
R+P DD ++ DK+A+YL EF VGHSLGD W+ LP V +QSA FDFFC
Sbjct: 1687 RSPIALFAKLAIAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFDFFC 1746
Query: 363 RECSKEQKLALKIGEVPELLCQTMLSLGFSWLSRPLY 473
R ++ KLAL +GEVPE + Q + L SWLS +Y
Sbjct: 1747 RRAPRDLKLALHLGEVPETIIQRLSHL--SWLSHAVY 1781
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 150 bits (364), Expect = 3e-35
Identities = 72/157 (45%), Positives = 89/157 (56%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
EY VSGDDSL+ PP P+W + PLLSL FKKE R FCGYY G +
Sbjct: 1765 EYMAANTPTMVSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGYYASHVGCV 1824
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
R+P DD ++ DK+ASYLSEF +GHSLGD W LP + V +QSA FDFFC
Sbjct: 1825 RSPVALFAKLAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSACFDFFC 1884
Query: 363 RECSKEQKLALKIGEVPELLCQTMLSLGFSWLSRPLY 473
R + KL+L +GEVPE + + W S +Y
Sbjct: 1885 RRAPRHLKLSLMLGEVPESII-ARIGSSLKWASHAIY 1920
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 141 bits (341), Expect = 2e-32
Identities = 69/186 (37%), Positives = 99/186 (53%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
+Y + + VSGDDS+V+ PP +P W+A+ LL L FK LFCGYY+ P GA+
Sbjct: 1549 QYSMGSTPCLVSGDDSVVAGQPPVNPAWNAIKNLLHLKFKTHCSAYPLFCGYYVSPVGAV 1608
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
R P DD ++P+K SYLSEF VGHS+G FW+ +P YQ+A+++FFC
Sbjct: 1609 RNPHALFAKLMIAHDDGSIPEKKLSYLSEFSVGHSIGHEFWSAIPDSIHCYQAAVYNFFC 1668
Query: 363 RECSKEQKLALKIGEVPELLCQTMLSLGFSWLSRPLYXXXXXXXXXXXXXXXXFAPLFSD 542
R CS+ +KL L + + E + LS W+S+ L+ + D
Sbjct: 1669 RHCSRSEKLLLTLDSIDESHLE-KLSYKVKWVSKTLFSMLPQKARDHFISASKISSFPDD 1727
Query: 543 PSVEGV 560
PSV +
Sbjct: 1728 PSVSSL 1733
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 138 bits (334), Expect = 1e-31
Identities = 68/157 (43%), Positives = 91/157 (57%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
+YD+ VSGDDS +S +W V LL L K + +GLFCGYYLGP G I
Sbjct: 1553 QYDLRKTPTLVSGDDSYLSGTLSPRSNWPFVKELLHLRLKPSSLIDGLFCGYYLGPQGCI 1612
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
R P DD + DK+ SYL+EF +GH LGD W LLP+D V+YQSA FD+FC
Sbjct: 1613 RNPLALFAKLMIAEDDGSAFDKLPSYLTEFSIGHGLGDSLWQLLPSDLVLYQSACFDYFC 1672
Query: 363 RECSKEQKLALKIGEVPELLCQTMLSLGFSWLSRPLY 473
R+ ++ QK+ L+ G V + ++L ++SRP Y
Sbjct: 1673 RKATRSQKILLQPGLVDQETLD-KIALSAKFISRPFY 1708
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 137 bits (332), Expect = 2e-31
Identities = 67/154 (43%), Positives = 85/154 (55%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
+YD+ + + VSGDDSL+ P P DW +V L L FK E + LFCGYY+GPAG I
Sbjct: 1651 QYDVGSCPIMVSGDDSLIDHPLPTRHDWPSVLKRLHLRFKLELTSHPLFCGYYVGPAGCI 1710
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
R P DD L D+ SYL+EF GH LG+ W LLP V YQSA FDFFC
Sbjct: 1711 RNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQYQSACFDFFC 1770
Query: 363 RECSKEQKLALKIGEVPELLCQTMLSLGFSWLSR 464
R C + +K+ L P L ++ WL++
Sbjct: 1771 RRCPRHEKMLLD-DSTPALSLLERITSSPRWLTK 1803
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 136 bits (329), Expect = 5e-31
Identities = 68/154 (44%), Positives = 85/154 (55%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
++D+ V VSGDDSL+ PP W+A LL L FK E + LFCGYY G AGAI
Sbjct: 1680 QFDMKDIPVMVSGDDSLIDRQPPLAQSWEATKRLLHLRFKTEKTTHPLFCGYYTGSAGAI 1739
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
R P DD + D+ SYL+EF GH LGD WTLLP IYQSA FD+FC
Sbjct: 1740 RNPLALFSKLMIAIDDEAIHDRRLSYLTEFSTGHQLGDALWTLLPESTQIYQSACFDYFC 1799
Query: 363 RECSKEQKLALKIGEVPELLCQTMLSLGFSWLSR 464
R +K L E+P+ + + +S WLS+
Sbjct: 1800 RHSPPHEKALLSSFELPDSVI-SKISSSTKWLSK 1832
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 126 bits (304), Expect = 6e-28
Identities = 65/183 (35%), Positives = 91/183 (49%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
+Y + + +SGDDS++ PP P W + +L L FK E + LFCGYY+ P GA
Sbjct: 1646 QYSLNGHPILISGDDSVLCGTPPPSPLWPTLKKMLHLRFKIERTSHPLFCGYYVSPHGAA 1705
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
R P DD++L DK SYLSEF GH GD ++LP+ + YQSA+ DFFC
Sbjct: 1706 RNPYALFAKLMICVDDKSLHDKKLSYLSEFSTGHLAGDLVTSILPSHLLPYQSAVHDFFC 1765
Query: 363 RECSKEQKLALKIGEVPELLCQTMLSLGFSWLSRPLYXXXXXXXXXXXXXXXXFAPLFSD 542
R C+ +K+ L + +PE L L W S+ + L+S+
Sbjct: 1766 RNCTPAEKILLSLDPIPESKI-LQLILKVRWASQAFFSYLPQKARELLVARSSLPSLYSN 1824
Query: 543 PSV 551
P V
Sbjct: 1825 PKV 1827
>UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physalis
mottle virus|Rep: RNA replicase polyprotein - Physalis
mottle virus (PhMV) (Belladonna mottle virus-Iowa)
Length = 178
Score = 124 bits (300), Expect = 2e-27
Identities = 58/117 (49%), Positives = 69/117 (58%)
Frame = +3
Query: 66 PPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPD 245
PP P+W A+ LL L FK E + LFCGYYL PAG IR P DD +LP+
Sbjct: 6 PPISPNWPAIKDLLHLKFKTEITSSPLFCGYYLSPAGCIRNPLAHFAKLMTCVDDMSLPE 65
Query: 246 KIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQKLALKIGEVPE 416
K+ SYLSE +GH+LGD LP + YQSA FDFFCR C+ QKL L +PE
Sbjct: 66 KVLSYLSEVSIGHNLGDQIIQHLPPHLIQYQSACFDFFCRNCTPSQKLLLSNDPIPE 122
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 120 bits (290), Expect = 3e-26
Identities = 62/157 (39%), Positives = 82/157 (52%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
+Y I+ + VSGDDS++ PP +P+W AV LL L FK E LFCGYY+GP G
Sbjct: 1576 QYVISDHPIMVSGDDSVICGHPPINPNWPAVEKLLHLRFKTEETSLPLFCGYYVGPTGCC 1635
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
R P D L + + SYL EF +GH LGD L P + Y SA +D FC
Sbjct: 1636 RNPFALFAKLMISYDKGNLFETLPSYLYEFSIGHRLGDVVRLLFPDHLLKYYSACWDLFC 1695
Query: 363 RECSKEQKLALKIGEVPELLCQTMLSLGFSWLSRPLY 473
R+C+ QKL L +P + S W+S+ L+
Sbjct: 1696 RKCTASQKLILSFEPIPPSFFSKLASTS-RWVSKVLF 1731
>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
latent virus|Rep: Coat protein - Bombyx mori Macula-like
latent virus
Length = 237
Score = 88.2 bits (209), Expect = 2e-16
Identities = 43/46 (93%), Positives = 44/46 (95%)
Frame = +1
Query: 589 MEEIVPLVVSAASAIPSLVDAFSSSKPPQTDTPPARSMDMQPLPSS 726
MEEIVPLVVSAASAIPSLV+AFSSSKPPQTD P ARSMDMQPLPSS
Sbjct: 1 MEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQPLPSS 46
>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom spherical virus|Rep: RNA-dependent RNA
polymerase - Oyster mushroom spherical virus
Length = 1581
Score = 59.7 bits (138), Expect = 7e-08
Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Frame = +3
Query: 36 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 215
SGDD + P P W ++S SL K FCG+ L G IR P
Sbjct: 1414 SGDDMFILCVPTISPGWLSISRYFSLVGKPVITFLPEFCGWLLTSHGIIRHPYLLYAKYL 1473
Query: 216 XXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKEQKLAL 395
++ TL + + SY EF +LGD W LP D + YQ L F + S+ +
Sbjct: 1474 FHKENGTLANVLISYYMEFQHSLTLGDALWESLPYDLLPYQGQLQLLFNQARSRVPSFLI 1533
Query: 396 ---KIGEVP 413
K+G+ P
Sbjct: 1534 RENKLGDAP 1542
>UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein)
(ORF1 polyprotein) [Contains: Putative RNA-directed RNA
polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
protein]; n=18; Apple stem grooving virus|Rep: Genome
polyprotein (241 kDa polyprotein) (ORF1 polyprotein)
[Contains: Putative RNA-directed RNA polymerase/helicase
(EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem
grooving virus (strain Korea) (ASGV)
Length = 2105
Score = 50.0 bits (114), Expect = 6e-05
Identities = 24/86 (27%), Positives = 44/86 (51%)
Frame = +3
Query: 108 SLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHS 287
SLT +E + +FCG+YL P G I++P+ + + L + + +YL E + +
Sbjct: 1476 SLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLKECVDNYLFEAIFAYR 1535
Query: 288 LGDPFWTLLPADQVIYQSALFDFFCR 365
LG+ +T+L + Y + FF +
Sbjct: 1536 LGERLYTILKEEDFEYHYLVIRFFVK 1561
>UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep:
Replicase - Potato virus T
Length = 248
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = +3
Query: 6 YDITTQTVFV-SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
Y+IT TV +GDD S D + + L+L K +F +FCG+Y+ G +
Sbjct: 84 YNITRDTVIAFAGDDMYASGKLEIRKDREDLLAHLTLKAKVQFTEKPMFCGWYIKKMGIV 143
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFW 305
+ PR + + +Y E G+ LG+ W
Sbjct: 144 KEPRLVLERWLIAERKKVIDQCFINYSIEVSYGYRLGEYLW 184
>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
replicase - Cherry virus A
Length = 2342
Score = 44.4 bits (100), Expect = 0.003
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Frame = +3
Query: 3 EYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGA 179
+YD+ T + +GDD + P + ++ ++ SL K +F R+ FCG+ L G
Sbjct: 1496 KYDVRKTHAICFAGDDMCANVRLPENHEYSSLLKKFSLKAKVDFTRSPTFCGWNLSRYGI 1555
Query: 180 IRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFF 359
++ P + + SY E + ++ GD + +L ++ + L FF
Sbjct: 1556 VKKPELIAARLAVARQKGEVNLVLDSYFLEHLYAYNKGDHLFEILSEKELEHHYNLTRFF 1615
Query: 360 CR 365
+
Sbjct: 1616 VK 1617
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 43.2 bits (97), Expect = 0.007
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Frame = +3
Query: 36 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXX 200
+GDDS + P P + +SP LSL K + FCG+ + P G I+ P
Sbjct: 1528 AGDDSACAAPLSEKPSFQHISPELSLKSKAKIRSQTKGDYATFCGWLITPKGFIKNPTQL 1587
Query: 201 XXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSAL 347
++ L D +Y + + + L D + LL +++ + L
Sbjct: 1588 YASWLLAKHNKDLQDVARNYALDLRIAYQLKDELYELLSPEELDHHQLL 1636
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 42.3 bits (95), Expect = 0.012
Identities = 27/87 (31%), Positives = 39/87 (44%)
Frame = +3
Query: 105 LSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGH 284
LSL K + +FCG+ L G I+ P ++ L D I SY EF +
Sbjct: 1748 LSLKAKVNRTKVPMFCGWRLCFDGLIKEPCLIYERLQVAIENGRLMDVIDSYFLEFSFAY 1807
Query: 285 SLGDPFWTLLPADQVIYQSALFDFFCR 365
LG+ ++ L +Q+ Y L FF R
Sbjct: 1808 KLGERLYSHLEIEQLNYHQVLTRFFIR 1834
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep:
158kDa replicase - Botrytis virus X
Length = 1413
Score = 41.1 bits (92), Expect = 0.027
Identities = 25/103 (24%), Positives = 41/103 (39%)
Frame = +3
Query: 36 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 215
+GDD P W +S +L K R FCG+ L G ++ P+
Sbjct: 1233 AGDDLARDRNCPERASWKYISHQFTLQAKPLVTRKPDFCGWSLTKHGIVKNPKQLWQSMQ 1292
Query: 216 XXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSA 344
L D + SY +F ++LGD + + +++ Y A
Sbjct: 1293 LGLKLDKLKDIVPSYSLDFHHAYALGDKVYDIFTEEEMAYHQA 1335
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 38.3 bits (85), Expect = 0.19
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Frame = +3
Query: 6 YDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
YD+ ++ V +GDD S + D L L K +F FCG+ L P G
Sbjct: 1854 YDMNGSEAVCFAGDDMCASKHLRVQSEHDKFLDKLKLKAKVQFTEKPTFCGWNLCPDGIY 1913
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 296
+ P+ + L + I +Y E + +G+
Sbjct: 1914 KKPQLVLERMCIARETNNLANCIDNYAIEVAFAYKMGE 1951
>UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep:
Replicase - Mint virus 2
Length = 500
Score = 38.3 bits (85), Expect = 0.19
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +3
Query: 6 YDITTQT-VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
Y IT T + +GDD D++ V L L K + + LFCG+ + P G +
Sbjct: 339 YCITKDTPICYAGDDMYAPGVLQVKSDYEHVLKELQLKAKVQVSTSPLFCGWRMTPYGIV 398
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 296
+ P D L + +Y E V G+ LG+
Sbjct: 399 KDPNLLLDRWKMAKRDGKLDLCMINYALEAVYGYRLGE 436
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 37.5 bits (83), Expect = 0.33
Identities = 24/109 (22%), Positives = 43/109 (39%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
+ D T + + +GDD + P W PL SL K FCG+ L G +
Sbjct: 1337 QLDSTVKACY-AGDDLVRDKACDERPGWKYSEPLFSLKAKPLVTNKPDFCGWRLTKYGIV 1395
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQV 329
++P + + SY +++ + LGD + + D++
Sbjct: 1396 KSPVQLYQSLQLALRLGKVEEVKRSYAIDYLFAYRLGDQLYDIFDEDEL 1444
>UniRef50_Q1WAJ5 Cluster: 27 kDa protein; n=1; White ash mosaic
virus|Rep: 27 kDa protein - White ash mosaic virus
Length = 243
Score = 35.5 bits (78), Expect = 1.3
Identities = 21/98 (21%), Positives = 35/98 (35%)
Frame = +3
Query: 36 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXX 215
+GDD W ++P LT K FCG+ + G ++ PR
Sbjct: 82 AGDDLAREECAEERSSWAYLNPSFKLTAKPIETTRPDFCGWRITKEGIVKQPRQLYQSLV 141
Query: 216 XXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQV 329
+ I SY +F + +GD + + D +
Sbjct: 142 LGFLRGNIASMIPSYKIDFTYAYKMGDKLFEIFDEDDL 179
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 35.1 bits (77), Expect = 1.8
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +3
Query: 6 YDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
Y++T ++++ +GDD + + + ++ L K +FV N FCG+ L G
Sbjct: 2024 YELTGSESIAFAGDDMCANRRLRLKTEHEGFLNMICLKAKVQFVSNPTFCGWCLFKEGIF 2083
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQV 329
+ P+ + L + I +Y E + LG+ ++ ++V
Sbjct: 2084 KKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEV 2132
>UniRef50_Q54EF8 Cluster: Gelsolin-related protein; n=1;
Dictyostelium discoideum AX4|Rep: Gelsolin-related
protein - Dictyostelium discoideum AX4
Length = 1695
Score = 34.7 bits (76), Expect = 2.3
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 634 PSLVDAFSSSKPPQTDTPPARSMDMQPLPSS 726
P+++ + SSS PP+++ PP+ + QP PSS
Sbjct: 101 PTIISSSSSSSPPKSNVPPSVDISNQPPPSS 131
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 33.9 bits (74), Expect = 4.1
Identities = 24/130 (18%), Positives = 44/130 (33%)
Frame = +3
Query: 3 EYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAI 182
+Y++ + GDD ++ P W + +L K FCG+ + P G +
Sbjct: 1747 KYEVPSVAQVYGGDDKSINSPITVRTGWSQLVGKFNLVEKPVVGYEPTFCGWRIVPGGIV 1806
Query: 183 RAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFC 362
+ P+ Y E V+ D + + + Y AL F+
Sbjct: 1807 KDPQLLFWRTRYARIRYDAALWAPGYYDELVLSLKTSDRLMDHMSPNDLAYLQALVRFYT 1866
Query: 363 RECSKEQKLA 392
+ + LA
Sbjct: 1867 KLSRRLPSLA 1876
>UniRef50_A4E4Z5 Cluster: Putative uncharacterized protein; n=1;
Listeria monocytogenes HPB2262|Rep: Putative
uncharacterized protein - Listeria monocytogenes HPB2262
Length = 225
Score = 33.9 bits (74), Expect = 4.1
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 556 VFCNWISDDLFMEEIVPLVVSAASAIPSLVDAFSSSKP 669
++C+++++D F+EEI+P + A S I ++ F S P
Sbjct: 57 IYCDYVNNDRFLEEIIPYI--ATSKIDGVIPGFEYSVP 92
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 33.5 bits (73), Expect = 5.4
Identities = 19/92 (20%), Positives = 39/92 (42%)
Frame = +3
Query: 21 QTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXX 200
+++ +GDD + D++ V ++L K ++ FCG+ LG G ++ P+
Sbjct: 1897 ESICFAGDDMCANKLLRKKGDFEHVLNRMTLKAKVQYTTEPTFCGWRLGSFGIVKRPQLV 1956
Query: 201 XXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 296
+ + I +Y E + LG+
Sbjct: 1957 QERILIALEKGNFIECIDNYAIEVSYAYKLGE 1988
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 33.5 bits (73), Expect = 5.4
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Frame = +3
Query: 30 FVSGDDSLVSPPPPAHPDWDAVSPLLSLTFK-----KEFVRNGLFCGYYLGPAGAIRAPR 194
F +GDDS P + A+S +SLT K ++ + FCG+ + P G I+ P
Sbjct: 1380 FFAGDDSAQDCPAVEKSSFQAISGRMSLTSKPVSYAQKPGKFAEFCGWSITPLGVIKDPL 1439
Query: 195 XXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQ-VIYQSAL 347
+ SY + + LGD +L +Q V++Q +
Sbjct: 1440 KLYASLELACRTDNKENVAQSYALDAKHAYQLGDALHDILTPEQFVMHQKTI 1491
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 33.5 bits (73), Expect = 5.4
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Frame = +3
Query: 36 SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXX 200
+GDDS + P P + + L+L K + FCG+ + P G I+ P+
Sbjct: 1415 AGDDSAIDGLPALRPSFKMIEQKLTLRSKPQVALQQKGDWAEFCGFRITPKGLIKDPKKL 1474
Query: 201 XXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIY 335
+ + + SY + + + D LL +++ Y
Sbjct: 1475 HASWMLEKKKGNVKNVLRSYELDLALAYQHKDSLHELLSEEELKY 1519
>UniRef50_Q94J61 Cluster: Putative uncharacterized protein
P0468H06.7; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
P0468H06.7 - Oryza sativa subsp. japonica (Rice)
Length = 166
Score = 33.1 bits (72), Expect = 7.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 619 AASAIPSLVDAFSSSKPPQTDTPPARSMDMQPLPS 723
A S P D++SSS PP T TPP + P P+
Sbjct: 126 AHSRSPCQADSYSSSSPPPTPTPPPPWLPPSPTPT 160
>UniRef50_A4RF10 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 548
Score = 33.1 bits (72), Expect = 7.2
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 12 ITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 137
++T+T+ D+S V P A P WDA+S L S +++FV+
Sbjct: 251 LSTETLVAQADNSFVFVAPQAAPTWDAISELES---EEDFVK 289
>UniRef50_A4QTP3 Cluster: Putative uncharacterized protein; n=4;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 824
Score = 33.1 bits (72), Expect = 7.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 42 DDSLVSPPPPAHPDWDAVSPLLSLTFK 122
D S++ PPPPA P +++P+++ TF+
Sbjct: 514 DASMMPPPPPAQPKGPSLNPIITTTFR 540
>UniRef50_A6F1T3 Cluster: Chemotaxis protein histidine kinase and
related kinase; n=1; Marinobacter algicola DG893|Rep:
Chemotaxis protein histidine kinase and related kinase -
Marinobacter algicola DG893
Length = 2501
Score = 32.7 bits (71), Expect = 9.5
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 571 ISDDLFM-EEIVPLVVSAASAIPSLVDAFSSSKPPQTDT 684
I +FM ++I L+ +A+P LVD F +PP DT
Sbjct: 848 IDGSIFMNDDIAALLEDVTAALPELVDDFEKRQPPSRDT 886
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,984,468
Number of Sequences: 1657284
Number of extensions: 15172534
Number of successful extensions: 52041
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 47987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51967
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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