Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5g06
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 29 0.90
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 28 1.2
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 27 2.1
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 27 2.1
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 4.8
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 26 4.8
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 26 4.8
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 6.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 8.4
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.7 bits (61), Expect = 0.90
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 616 SAASAIPSLVDAFSSSKPPQTDTPP 690
S S+ PSL + +S PP T TPP
Sbjct: 158 STVSSTPSLNHSLQNSMPPSTPTPP 182
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 389 RPQNRRSARTSLSDNAFPRFLLVITPP 469
RPQ +RS+ LS +AF +F+ +PP
Sbjct: 139 RPQAKRSSSRLLSTDAFSQFISSFSPP 165
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 580 DLFMEEIVPLVVSAASAIPSLVDAFSSSKPPQTDTPPARSMDMQP 714
D+F + +P++ ++A IPSL A SK P T+ SM+ P
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTE-KHVSSMEYAP 282
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 434 HCLTKKFGH--FSYFEGEFLFLGTFTAKEIKKRAL 336
+ L GH S+ GE F GT+ A+E K RAL
Sbjct: 319 YMLAASLGHDRSSFLVGEAFFYGTYGARENKLRAL 353
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 670 GVWKKRKHRPRREWPKRQKRLKAQF 596
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = -2
Query: 691 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQFLP*IGHQKSSCKTPSTEGSE 536
+A + + WKK + + EW K ++ KA++ K+ K E E
Sbjct: 134 KAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKE 185
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -2
Query: 691 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 596
+A + + WKK + + EW K ++ KA++
Sbjct: 123 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 154
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 378 PWNIHGKRNQKARSGKSLD-LLARESRKGRRE 286
PW + K K R GK+++ LL R+ +G+ +
Sbjct: 286 PWGVLAKGGYKTRRGKNVNKLLVRDRPRGKEK 317
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 622 ASAIPSLVDAFSSSKPPQTDTPPARSMD 705
A+ P++V F + PQ D PP R+++
Sbjct: 211 ATGYPAIVVPFLNGSLPQADLPPLRTIE 238
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/37 (29%), Positives = 14/37 (37%)
Frame = +2
Query: 104 PFSYIQKRVCQKRSLLWLLLGTGRSHSCSPCPTGQTC 214
PF+Y C+ +SL W C P TC
Sbjct: 545 PFAYYYCLQCECKSLHWRFSDRSNCDECGHKPMSHTC 581
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 33 VSGDDSLVSPPPPAHPDWDAVSPLLSL 113
VS +S+VSPPP P A +P SL
Sbjct: 158 VSAPNSMVSPPPSFQPP-SAAAPATSL 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,541
Number of Sequences: 5004
Number of extensions: 60104
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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