Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5g06
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0175 + 22966151-22967614                                         31   0.94 
06_03_1105 - 27634787-27636025                                         31   1.2  
06_01_0087 + 695443-695655,696669-696983                               29   2.9  
09_02_0081 - 4041364-4041555,4041830-4041911,4042192-4042443,404...    28   6.6  
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928...    28   8.7  

>05_05_0175 + 22966151-22967614
          Length = 487

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -3

Query: 591 HE*VIRNPVAKHPLQKDRKRGGRNECELIN--VGGRSYPEEHKGGVITRRNRGKALSDKE 418
           HE V   P A+  L   R  GG    E++   VGG  Y  E +GG   ++ R + +SD  
Sbjct: 5   HERVAPPPAAE--LAGRRGGGGGEGMEIVTARVGGCGYGYEEEGGTRRQQRRRRKVSDGH 62

Query: 417 VRALLL 400
           V A LL
Sbjct: 63  VVAQLL 68


>06_03_1105 - 27634787-27636025
          Length = 412

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
 Frame = +1

Query: 574 SDDLFME-EIVPLVVSAASAIPSLVDAFSSSKPPQTDTPPARSMDMQPL 717
           +D+LF + +++PL    A+A+P + DA ++ +PPQ +  PA S  M+PL
Sbjct: 86  ADELFADGKLLPL--RKAAAVPEM-DA-AAPRPPQPEAMPAPSEPMKPL 130


>06_01_0087 + 695443-695655,696669-696983
          Length = 175

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +3

Query: 42  DDSLVSPPPPAH---PDWDAVSPL 104
           DD L  PPPPA     DW+A +PL
Sbjct: 26  DDELPPPPPPASGSGEDWEATTPL 49


>09_02_0081 -
           4041364-4041555,4041830-4041911,4042192-4042443,
           4042529-4044001,4044222-4044733,4044824-4045021
          Length = 902

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 610 VVSAASAIPSLVDAFSSSKPPQTDTPPARSMDMQPLPS 723
           + +AA A PS  +  S   PP+  TPP       PLP+
Sbjct: 489 MTAAAPAPPSPPEPPSPRHPPRQPTPPPSPSQQPPLPT 526


>10_08_0666 -
           19691985-19692216,19692327-19692404,19692508-19692837,
           19692913-19693158,19693224-19693483,19694469-19695023
          Length = 566

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 393 GRVFVPWNIHGKRNQKARSGKSL 325
           GR  VPW++HGK    +R+ +++
Sbjct: 253 GRCLVPWHLHGKHFPSSRTRRAV 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,683,448
Number of Sequences: 37544
Number of extensions: 464051
Number of successful extensions: 1821
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)