Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5g05
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 48 1e-06
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 28 1.1
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo... 28 1.5
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 27 2.5
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 27 3.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 4.4
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 4.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 5.9
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 7.8
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 7.8
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 25 7.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.8
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 48.4 bits (110), Expect = 1e-06
Identities = 37/177 (20%), Positives = 80/177 (45%), Gaps = 1/177 (0%)
Frame = +2
Query: 158 DKKGQGIAKNFAESLEYGEKKKWFH-QLPEEPVTLPKTLSTEQIEQLRKEATSSLHGDTL 334
+++G+G + + + W++ LPE K ++ + + +L L D+
Sbjct: 17 NEEGEGTIDTKPQGVMFDPGVPWYNIPLPELHED-KKFVNVDHVSELETRGLLLLKEDSE 75
Query: 335 AYETKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQDNPLYNLTALRNLINNVKPAKK 514
+ ++T G++D + +TL++ G DR++A T+L+Q++P++ + AL L++ +
Sbjct: 76 RF-SETLGHGTADKRMLQTLISSGTTSDRISALTLLVQESPIHAVKALETLLSICSKKSR 134
Query: 515 KDGIVIIDAXXXXXXXXXXXPDVKLRTFEQHPLGHLDEMTSGNKQTKRNILKLWYYE 685
+ I PD KL+ +Q + G+K L +W +E
Sbjct: 135 NEATQAI-TTLKDLFIGGLLPDRKLKYMKQ-------QSCLGSKNVTDKHLMVWAFE 183
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 242 QVADETISFFHHIQGFRRNSLRYPGLSYHLRSYQLDRN 129
QVA++ FFH+ G R+ + SYH +Y +D N
Sbjct: 632 QVAEKVKRFFHYY-GINRHKMTTLTPSYHAETYGVDDN 668
>SPBC1539.10 |||ribosome biogenesis protein Nop16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 27.9 bits (59), Expect = 1.5
Identities = 26/102 (25%), Positives = 43/102 (42%)
Frame = +2
Query: 206 YGEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWA 385
+GE K L +E P TE + QL +EA K + +H +
Sbjct: 114 HGEAKTLDDVLDKEISIAPA--KTEVVRQLEEEAVKK----AARQSNKMLPLSAFEHAYI 167
Query: 386 KTLLNKGAIGDRVAAATILIQDNPLYNLTALRNLINNVKPAK 511
+ L+NK D + A + ++ L+N + L+NL +K K
Sbjct: 168 QRLINKYGTEDFESMAKDVKLNSKLFNGSKLKNLYIRMKATK 209
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 2.5
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -2
Query: 323 RARNWWLPFLIVQF 282
R+ WWLP+++V+F
Sbjct: 113 RSHAWWLPYIVVEF 126
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +2
Query: 221 KWFHQLPEEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNR-SGSSDHQWAKTLL 397
K HQ+ E + STE +E L S+LH + K + G +++ W T +
Sbjct: 546 KPIHQIGAEASSSNNVKSTELLEGLANARKSALHEIFVKINLKIDDFLGLAEYDWTTTQV 605
Query: 398 NKGAIG 415
K G
Sbjct: 606 RKDVSG 611
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 156 MIRKARVSQRISPKALNMVKKRNGFISYLKNQSHCQKH 269
++ S R LNM KKR I +++ H QK+
Sbjct: 174 LVYAVEFSHRSGRDLLNMAKKRTNVIPIVEDARHVQKY 211
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 148 LISLTVISVSLIN*YVFLKSFMLHCKLLYHVTLNINKARENL 23
LIS V L++ +K +++ +L Y + L I ARENL
Sbjct: 829 LISSLRSKVDLLDRKFLIKEYLVLQQLKYSINLLITAARENL 870
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 5.9
Identities = 22/109 (20%), Positives = 44/109 (40%)
Frame = +2
Query: 80 KHKRFEENILIDEAYTNYGQADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTL 259
K K E+ + +A ++ +A ++D K N SL+ PE P+T
Sbjct: 471 KAKVKAESKVRSKAKSDKSRAKLSSDTNKDSEKNDNNDASLQSAGVASDGESSPETPLTK 530
Query: 260 PKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWAKTLLNKG 406
+ +L + + + +G+T + K+ + S Q A + +G
Sbjct: 531 ASKSKKAKASKLANDTSKNANGETKSTPKKSKKKTSKAQQEANSTTAEG 579
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 362 GSSDHQWAKTLLNKGAIGDRVAAATILIQDNPLYNLTA 475
G ++ + TL +KG V+AA L+Q LY + A
Sbjct: 1235 GFAEEPYRMTLFSKGQEALNVSAADFLVQGENLYFVVA 1272
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 293 LRKEATSSLHGDTLAYETKTNRSGS 367
LR+ + LHG LAY+ +SGS
Sbjct: 222 LRQSSVEYLHGSLLAYKELFEKSGS 246
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 13 RLFSGFHVPYLYL 51
RLF G H+PYL+L
Sbjct: 435 RLFQGTHLPYLFL 447
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 179 AKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKE 304
A+N A E K HQL E + + ++ EQ EQL+ E
Sbjct: 1451 AENEAMQKEIESLKDSNHQLQESASSDAEQITKEQFEQLKSE 1492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,895
Number of Sequences: 5004
Number of extensions: 54695
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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