Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5g05
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124... 52 6e-07
11_08_0083 + 28256844-28258760 30 1.5
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 30 2.0
10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556 29 2.6
01_01_0045 - 330630-331274 29 4.6
06_01_0888 + 6805071-6805485,6806202-6806374,6806501-6806549,680... 28 6.0
03_05_0514 - 25082662-25082669,25082978-25083043,25083903-250840... 28 6.0
02_05_0441 + 29040250-29040524,29040656-29040772,29040834-290411... 28 6.0
12_02_0713 + 22437458-22437651,22439100-22440612,22440755-22441282 28 8.0
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 28 8.0
02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101... 28 8.0
>09_01_0087 +
1245890-1246565,1247409-1247484,1247774-1247893,
1248927-1249002,1250767-1250835,1251019-1251099,
1251298-1251369,1251600-1251692,1251904-1252083,
1252558-1252641,1252729-1252872,1253089-1253178,
1255982-1256064,1256140-1256421,1256722-1256959,
1258307-1258957
Length = 1004
Score = 51.6 bits (118), Expect = 6e-07
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +2
Query: 356 RSGSSDHQWAKTLLNKGAIGDRVAAATILIQDNPLYNLTALRNLINNV-KPAKKKDGIVI 532
+ GS D + + G D+V+A T LI+DNP+ N+ AL +L+ V K+
Sbjct: 181 KRGSGDLKLLEISAKSGTSADKVSAFTCLIEDNPIANMRALDSLLGMVTSKVGKRYAFTG 240
Query: 533 IDAXXXXXXXXXXXPDVKLRTFEQHPLGHLDEMTSGNKQTKRNILKLWYYE 685
DA PD KL++ QHPL L E G ++L WY+E
Sbjct: 241 FDA-LKELFLKRVLPDRKLKSLIQHPLDILPETKDG-----YSLLLFWYWE 285
>11_08_0083 + 28256844-28258760
Length = 638
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = +2
Query: 221 KWFHQLPEEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSD 373
K+F+Q P+ P L S QI L ATSS DT TN + D
Sbjct: 60 KFFYQFPDHPALLQAQQSYAQI--LHAPATSSSSDDTTINNNTTNSTSVPD 108
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +2
Query: 218 KKWFHQLPEEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWAKTLL 397
K F LP++ KT S Q +K ++S G ++ET ++ S +Q + T
Sbjct: 1962 KDTFSNLPQDQEQSAKTFSIASFPQEQKSSSSGSSGMHNSFETAEVKADDSSNQASSTTF 2021
Query: 398 NKGAIGDRVAAA 433
G V +A
Sbjct: 2022 LNGQANQVVQSA 2033
>10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556
Length = 693
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = +1
Query: 424 CRCHNSYPGQSVVQFNSAQKFNKQCQTGQEERWYCYNRC 540
C+C Y G V + K +C ++++ CY C
Sbjct: 285 CKCKQGYDGNPYVDKDQGCKDINECDVSNKKKYPCYGVC 323
>01_01_0045 - 330630-331274
Length = 214
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +2
Query: 272 STEQIEQLRKEATSSLH-GDTLAYETKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQ 448
+T+ + R + + H GDT + K R S DH A T + + +VA A L+
Sbjct: 49 ATKNHHRFRLDLLNYYHRGDTASASDKKKRKRSEDHHQAATHVKQEQEAQQVAFAADLVA 108
Query: 449 DNPLYNLTALRN 484
+ T+ +N
Sbjct: 109 EEETDKETSKKN 120
>06_01_0888 +
6805071-6805485,6806202-6806374,6806501-6806549,
6806654-6806820,6806919-6807002,6807097-6807135
Length = 308
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 158 DKKGQGIAK--NFAESLEYGEKKKWFHQLPEEPVTLPKTLSTE 280
DKK +G + N L+ EK W QLPE +T+P T+
Sbjct: 130 DKKEEGNVRKPNAGNGLDL-EKYSWIQQLPEVTITVPVPQGTK 171
>03_05_0514 -
25082662-25082669,25082978-25083043,25083903-25084017,
25084769-25084843,25085285-25085338,25085420-25085471,
25087308-25087447,25087993-25088077,25088358-25088431,
25088533-25088616,25088617-25088653,25089569-25089872,
25090371-25090536,25091053-25091076
Length = 427
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 263 KTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWAKTL 394
+TLS+ E +EA+++LH L T ++ SS H A T+
Sbjct: 269 RTLSSAGTEPTAREASANLHASLLDSTTPSDPLTSSQHPAANTV 312
>02_05_0441 +
29040250-29040524,29040656-29040772,29040834-29041143,
29041863-29042018,29042332-29042483,29042783-29042936,
29043897-29043998,29044168-29044209
Length = 435
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -1
Query: 519 SFFLAGLTLFIKFLSAVKLYNGLSWIRIVAAATLSPIAPLFRRVLA 382
SFF+ GLT F + + GLS+ AA + P P+F +LA
Sbjct: 84 SFFILGLTGI--FANQLLFLFGLSYTNPTYAAAIQPSIPVFTFILA 127
>12_02_0713 + 22437458-22437651,22439100-22440612,22440755-22441282
Length = 744
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3
Query: 256 CDWFFR*LMKPFLFFTIFKAFGEILCDTLAFLIICVLISLTVISV 122
CD+ L+ F++ FG ILC AF I +LI+ T +SV
Sbjct: 83 CDYILNELVLVFVWVVHVLVFGIILCPLAAFYIFGLLIT-TGLSV 126
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +2
Query: 137 QADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKEATSS 316
+ +K KK + ++ A + G+KKK + EEP T E+ E+ +K+ + S
Sbjct: 483 EGEKKKKKKKSKESEESPAADADGGKKKKKTSKESEEPPV--ATTEGEKKEKKKKKKSDS 540
Query: 317 LHGDTLAYETK 349
+ +A ET+
Sbjct: 541 QDAEDVAMETE 551
>02_01_0141 +
1017654-1017745,1018332-1018389,1018485-1018595,
1018853-1018990,1019559-1019628,1019711-1019766,
1020203-1020328,1020648-1020787,1020932-1021004,
1021095-1021169,1021277-1021591
Length = 417
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 155 DDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQI 286
D + G+G+ N S+++G+K+K + E P T P + QI
Sbjct: 153 DRRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGTAPFSEPEAQI 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,875,547
Number of Sequences: 37544
Number of extensions: 326915
Number of successful extensions: 758
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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