Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5g05
(687 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M37197-1|AAA51924.1| 998|Homo sapiens CCAAT-box-binding factor ... 81 5e-15
BC034475-1|AAH34475.1| 1054|Homo sapiens CCAAT/enhancer binding ... 81 5e-15
AC007390-3|AAY14815.1| 1054|Homo sapiens unknown protein. 81 5e-15
Z74739-3|CAA98995.2| 3085|Homo sapiens 214K23.1 (breast cancer 2... 31 5.1
X95152-1|CAA64484.1| 3418|Homo sapiens brca2 protein. 31 5.1
U43746-1|AAB07223.1| 3418|Homo sapiens BRCA2 protein. 31 5.1
DQ897648-1|ABI74674.1| 2649|Homo sapiens breast and ovarian canc... 31 5.1
AY436640-1|AAQ97181.1| 3418|Homo sapiens breast cancer 2, early ... 31 5.1
AL445212-4|CAI40479.1| 3418|Homo sapiens breast cancer 2, early ... 31 5.1
AL137247-6|CAI13195.1| 3418|Homo sapiens breast cancer 2, early ... 31 5.1
AY358109-1|AAQ88476.1| 115|Homo sapiens ACAH3104 protein. 30 6.7
>M37197-1|AAA51924.1| 998|Homo sapiens CCAAT-box-binding factor
protein.
Length = 998
Score = 80.6 bits (190), Expect = 5e-15
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Frame = +2
Query: 338 YETKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQDNPLYNLTALRNLINNV-KPAKK 514
+++KTN + W K +++ G +GDR+AA +LIQD+ ++ L + L+N V K K
Sbjct: 220 FKSKTNSQKGASSTWMKAIVSSGTLGDRMAAMILLIQDDAVHTLQFVETLVNLVKKKGSK 279
Query: 515 KDGIVIIDAXXXXXXXXXXXPDVKLRTFEQHPLGHLDEMTSGNKQTKRNILKLWYYE 685
+ ++ +D + KLR F Q P L++++SGNK ++ L LWY+E
Sbjct: 280 QQCLMALDTFKELLITDLLPDNRKLRIFSQRPFDKLEQLSSGNKDSRDRRLILWYFE 336
>BC034475-1|AAH34475.1| 1054|Homo sapiens CCAAT/enhancer binding
protein zeta protein.
Length = 1054
Score = 80.6 bits (190), Expect = 5e-15
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Frame = +2
Query: 338 YETKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQDNPLYNLTALRNLINNV-KPAKK 514
+++KTN + W K +++ G +GDR+AA +LIQD+ ++ L + L+N V K K
Sbjct: 220 FKSKTNSQKGASSTWMKAIVSSGTLGDRMAAMILLIQDDAVHTLQFVETLVNLVKKKGSK 279
Query: 515 KDGIVIIDAXXXXXXXXXXXPDVKLRTFEQHPLGHLDEMTSGNKQTKRNILKLWYYE 685
+ ++ +D + KLR F Q P L++++SGNK ++ L LWY+E
Sbjct: 280 QQCLMALDTFKELLITDLLPDNRKLRIFSQRPFDKLEQLSSGNKDSRDRRLILWYFE 336
>AC007390-3|AAY14815.1| 1054|Homo sapiens unknown protein.
Length = 1054
Score = 80.6 bits (190), Expect = 5e-15
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Frame = +2
Query: 338 YETKTNRSGSSDHQWAKTLLNKGAIGDRVAAATILIQDNPLYNLTALRNLINNV-KPAKK 514
+++KTN + W K +++ G +GDR+AA +LIQD+ ++ L + L+N V K K
Sbjct: 220 FKSKTNSQKGASSTWMKAIVSSGTLGDRMAAMILLIQDDAVHTLQFVETLVNLVKKKGSK 279
Query: 515 KDGIVIIDAXXXXXXXXXXXPDVKLRTFEQHPLGHLDEMTSGNKQTKRNILKLWYYE 685
+ ++ +D + KLR F Q P L++++SGNK ++ L LWY+E
Sbjct: 280 QQCLMALDTFKELLITDLLPDNRKLRIFSQRPFDKLEQLSSGNKDSRDRRLILWYFE 336
>Z74739-3|CAA98995.2| 3085|Homo sapiens 214K23.1 (breast cancer 2,
early onset, protein) protein.
Length = 3085
Score = 30.7 bits (66), Expect = 5.1
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 242 EEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWAKTLLNKGAIGD- 418
+EP L ++ + ++ KE+ + E T+ S HQWAKTL + A D
Sbjct: 1517 KEPTLLGFHTASGKKVKIAKESLDKVKNLFDEKEQGTSEITSFSHQWAKTLKYREACKDL 1576
Query: 419 RVAAATILIQDNPLYNLTALRNLINNVK 502
+A TI I P ++N +NN K
Sbjct: 1577 ELACETIEITAAP--KCKEMQNSLNNDK 1602
>X95152-1|CAA64484.1| 3418|Homo sapiens brca2 protein.
Length = 3418
Score = 30.7 bits (66), Expect = 5.1
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 242 EEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWAKTLLNKGAIGD- 418
+EP L ++ + ++ KE+ + E T+ S HQWAKTL + A D
Sbjct: 1517 KEPTLLGFHTASGKKVKIAKESLDKVKNLFDEKEQGTSEITSFSHQWAKTLKYREACKDL 1576
Query: 419 RVAAATILIQDNPLYNLTALRNLINNVK 502
+A TI I P ++N +NN K
Sbjct: 1577 ELACETIEITAAP--KCKEMQNSLNNDK 1602
>U43746-1|AAB07223.1| 3418|Homo sapiens BRCA2 protein.
Length = 3418
Score = 30.7 bits (66), Expect = 5.1
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 242 EEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWAKTLLNKGAIGD- 418
+EP L ++ + ++ KE+ + E T+ S HQWAKTL + A D
Sbjct: 1517 KEPTLLGFHTASGKKVKIAKESLDKVKNLFDEKEQGTSEITSFSHQWAKTLKYREACKDL 1576
Query: 419 RVAAATILIQDNPLYNLTALRNLINNVK 502
+A TI I P ++N +NN K
Sbjct: 1577 ELACETIEITAAP--KCKEMQNSLNNDK 1602
>DQ897648-1|ABI74674.1| 2649|Homo sapiens breast and ovarian cancer
susceptibility protein 2 truncated variant protein.
Length = 2649
Score = 30.7 bits (66), Expect = 5.1
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 242 EEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWAKTLLNKGAIGD- 418
+EP L ++ + ++ KE+ + E T+ S HQWAKTL + A D
Sbjct: 1517 KEPTLLGFHTASGKKVKIAKESLDKVKNLFDEKEQGTSEITSFSHQWAKTLKYREACKDL 1576
Query: 419 RVAAATILIQDNPLYNLTALRNLINNVK 502
+A TI I P ++N +NN K
Sbjct: 1577 ELACETIEITAAP--KCKEMQNSLNNDK 1602
>AY436640-1|AAQ97181.1| 3418|Homo sapiens breast cancer 2, early onset
protein.
Length = 3418
Score = 30.7 bits (66), Expect = 5.1
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 242 EEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWAKTLLNKGAIGD- 418
+EP L ++ + ++ KE+ + E T+ S HQWAKTL + A D
Sbjct: 1517 KEPTLLGFHTASGKKVKIAKESLDKVKNLFDEKEQGTSEITSFSHQWAKTLKYREACKDL 1576
Query: 419 RVAAATILIQDNPLYNLTALRNLINNVK 502
+A TI I P ++N +NN K
Sbjct: 1577 ELACETIEITAAP--KCKEMQNSLNNDK 1602
>AL445212-4|CAI40479.1| 3418|Homo sapiens breast cancer 2, early onset
protein.
Length = 3418
Score = 30.7 bits (66), Expect = 5.1
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 242 EEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWAKTLLNKGAIGD- 418
+EP L ++ + ++ KE+ + E T+ S HQWAKTL + A D
Sbjct: 1517 KEPTLLGFHTASGKKVKIAKESLDKVKNLFDEKEQGTSEITSFSHQWAKTLKYREACKDL 1576
Query: 419 RVAAATILIQDNPLYNLTALRNLINNVK 502
+A TI I P ++N +NN K
Sbjct: 1577 ELACETIEITAAP--KCKEMQNSLNNDK 1602
>AL137247-6|CAI13195.1| 3418|Homo sapiens breast cancer 2, early onset
protein.
Length = 3418
Score = 30.7 bits (66), Expect = 5.1
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 242 EEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDHQWAKTLLNKGAIGD- 418
+EP L ++ + ++ KE+ + E T+ S HQWAKTL + A D
Sbjct: 1517 KEPTLLGFHTASGKKVKIAKESLDKVKNLFDEKEQGTSEITSFSHQWAKTLKYREACKDL 1576
Query: 419 RVAAATILIQDNPLYNLTALRNLINNVK 502
+A TI I P ++N +NN K
Sbjct: 1577 ELACETIEITAAP--KCKEMQNSLNNDK 1602
>AY358109-1|AAQ88476.1| 115|Homo sapiens ACAH3104 protein.
Length = 115
Score = 30.3 bits (65), Expect = 6.7
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = -3
Query: 181 CDTLAFLIICVLISLTVISVSLIN*YVFLKSFML 80
CDTLAF ++ +L S ++++ S + + L +F+L
Sbjct: 74 CDTLAFSLLLILYSFSILNTSTHSEMLLLPAFLL 107
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,023,163
Number of Sequences: 237096
Number of extensions: 1853438
Number of successful extensions: 3597
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3594
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -