Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5g05
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77659-5|CAB01168.1| 953|Caenorhabditis elegans Hypothetical pr... 70 1e-12
AF036688-8|AAB88314.2| 482|Caenorhabditis elegans Hypothetical ... 32 0.44
Z95559-10|CAB63364.2| 327|Caenorhabditis elegans Hypothetical p... 29 2.4
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ... 29 3.1
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF025452-3|AAB70939.2| 198|Caenorhabditis elegans Hypothetical ... 28 7.2
U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 27 9.5
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 27 9.5
AC024852-6|ABQ13049.1| 84|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z77659-5|CAB01168.1| 953|Caenorhabditis elegans Hypothetical
protein F23B12.7 protein.
Length = 953
Score = 70.1 bits (164), Expect = 1e-12
Identities = 38/163 (23%), Positives = 79/163 (48%), Gaps = 1/163 (0%)
Frame = +2
Query: 200 LEYGEKKKWF-HQLPEEPVTLPKTLSTEQIEQLRKEATSSLHGDTLAYETKTNRSGSSDH 376
+++ E KW+ +Q+ + ++ +I++L +E + D +TK + S+
Sbjct: 94 VKHQEGTKWYSYQIDHVHDEKTEKMNASEIQKLLEEGKDEMAQDAALLQTKEKQDNGSEA 153
Query: 377 QWAKTLLNKGAIGDRVAAATILIQDNPLYNLTALRNLINNVKPAKKKDGIVIIDAXXXXX 556
W ++++KG D+ A + + +P+++L + LI + K +D + II
Sbjct: 154 SWLYSVISKGTATDKRTAMQLQMHKSPVHSLEYIEKLIASCKKQGTRDVVDIIPILEDVF 213
Query: 557 XXXXXXPDVKLRTFEQHPLGHLDEMTSGNKQTKRNILKLWYYE 685
+ KL F + L L E++SGN++ +R IL +W +E
Sbjct: 214 INHCLPENRKLIPFSKRALRELTELSSGNQRLRRKILLMWAFE 256
>AF036688-8|AAB88314.2| 482|Caenorhabditis elegans Hypothetical
protein C24D10.1 protein.
Length = 482
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 74 TMKHKRFEENILIDEAYTNYGQADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPV 253
+MK + N D ++ NAD G+ +AK + +S++ E KK F +L +
Sbjct: 138 SMKKTKGAPNSTTDTPVSHKTSITGNADKWVGEDVAKTWMDSIDLAEVKKDFEKLQTMKI 197
Query: 254 TLPKTLST 277
+ K T
Sbjct: 198 DIDKDCKT 205
>Z95559-10|CAB63364.2| 327|Caenorhabditis elegans Hypothetical
protein Y41E3.15 protein.
Length = 327
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 268 CFWQCDWFFR*LMKPFLFFT--IFKAFGEILCDTLAFLI 158
C W+ +WF + +PFL ++ IF F E L + +LI
Sbjct: 20 CSWKSEWFETGVKRPFLGYSIMIFGVFIEFLYPPIIYLI 58
>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
protein F53H1.4a protein.
Length = 1370
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/88 (22%), Positives = 41/88 (46%)
Frame = +2
Query: 107 LIDEAYTNYGQADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQI 286
+I E + ++K + KK +N E ++ ++ + F +PE ++ +T + E
Sbjct: 653 IIREWFLRDANSEKLTEHKKEANRIRNEME--QFHQQLQDFPPIPEITESMTRTQTREAE 710
Query: 287 EQLRKEATSSLHGDTLAYETKTNRSGSS 370
+ LR+ DTL E + NR ++
Sbjct: 711 QSLRRREKLENQLDTLKIELEENREATA 738
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 140 ADKNADDKKGQGIAKNFAESLEYGEKKKWFHQLPEEPVTLPKTLSTEQIEQLRKE 304
A+KN +DKK + K E E EKK+ + EEP + EQ E++ K+
Sbjct: 281 AEKNEEDKKEEEPKKE-EEKKEEVEKKEEDEKKDEEPKKEEEKKEEEQKEEVEKK 334
>AF025452-3|AAB70939.2| 198|Caenorhabditis elegans Hypothetical
protein B0454.5 protein.
Length = 198
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 256 CDWFFR*LMKPFLFFTIFKAFGEILC 179
CDW+ + FLFF+IF F + C
Sbjct: 165 CDWWTYNIATFFLFFSIFWLFMSVFC 190
>U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical
protein R07E4.1b protein.
Length = 986
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 162 RKARVSQRISPKALNMVKKRNGFISYLKNQSHCQKH 269
R++ V QR+ P +N K++NGF + KH
Sbjct: 301 RQSLVWQRVFPMEINGKKRKNGFRELFSASTKLSKH 336
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
protein R07E4.1a protein.
Length = 1122
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 162 RKARVSQRISPKALNMVKKRNGFISYLKNQSHCQKH 269
R++ V QR+ P +N K++NGF + KH
Sbjct: 437 RQSLVWQRVFPMEINGKKRKNGFRELFSASTKLSKH 472
>AC024852-6|ABQ13049.1| 84|Caenorhabditis elegans Hypothetical
protein Y71F9AM.8 protein.
Length = 84
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 168 ARVSQRISPKALNMVKK-RNGFISYLKN 248
A + R+SP LN KK R+GF+ +LKN
Sbjct: 50 ANENLRMSPIELNFWKKLRDGFLDFLKN 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,203,280
Number of Sequences: 27780
Number of extensions: 309642
Number of successful extensions: 928
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -