Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f19
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   3.6  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   3.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   3.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   3.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   8.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.4  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 141 YILWKRM-SFFVAFPAIALGMLNAYLAHQEEHHER 242
           Y+++  + SFF+    ++L  L  YLA +    ER
Sbjct: 196 YVIYSSLGSFFIPLLLMSLVYLEIYLATRRRLRER 230


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 141 YILWKRM-SFFVAFPAIALGMLNAYLAHQEEHHER 242
           Y+++  + SFF+    ++L  L  YLA +    ER
Sbjct: 196 YVIYSSLGSFFIPLLLMSLVYLEIYLATRRRLRER 230


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 141 YILWKRM-SFFVAFPAIALGMLNAYLAHQEEHHER 242
           Y+++  + SFF+    ++L  L  YLA +    ER
Sbjct: 196 YVIYSSLGSFFIPLLLMSLVYLEIYLATRRRLRER 230


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +3

Query: 180 PAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPWGD 302
           PAI L +    LA  E  H  P F P     +    + W D
Sbjct: 3   PAIVLLLALLTLAAGEIAHNDPHFAPGHDAIVHLFEWKWND 43


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 6/15 (40%), Positives = 7/15 (46%)
 Frame = +3

Query: 213 LAHQEEHHERPPFVP 257
           + H   HH  PP  P
Sbjct: 459 IGHTPHHHPHPPETP 473


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 346 PAVMKMTTKLQ*FCFRKLVCKTF 414
           P +  + +K   F F+ ++CK F
Sbjct: 59  PCIYALFSKDFRFAFKSIICKCF 81


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 346 PAVMKMTTKLQ*FCFRKLVCKTF 414
           P +  + +K   F F+ ++CK F
Sbjct: 507 PCIYALFSKDFRFAFKSIICKCF 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,272
Number of Sequences: 438
Number of extensions: 2566
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)