Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5f18
(636 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000DA4330 Cluster: PREDICTED: similar to splicing f... 283 2e-75
UniRef50_Q15393 Cluster: Splicing factor 3B subunit 3; n=64; Euk... 283 2e-75
UniRef50_A7RHF3 Cluster: Predicted protein; n=1; Nematostella ve... 266 2e-70
UniRef50_Q54SA7 Cluster: CPSF domain-containing protein; n=1; Di... 233 3e-60
UniRef50_A4RYT7 Cluster: Predicted protein; n=3; Viridiplantae|R... 208 6e-53
UniRef50_Q8I574 Cluster: Splicing factor 3b, subunit 3, 130kD, p... 200 2e-50
UniRef50_Q7RIV2 Cluster: Drosophila melanogaster CG13900 gene pr... 196 5e-49
UniRef50_A7ATX1 Cluster: Splicing factor 3b, subunit 3, 130kD, p... 193 3e-48
UniRef50_A0ED07 Cluster: Chromosome undetermined scaffold_9, who... 193 3e-48
UniRef50_Q4UAB5 Cluster: Splicing factor 3b subunit, putative; n... 192 8e-48
UniRef50_Q4N305 Cluster: Putative uncharacterized protein; n=1; ... 189 4e-47
UniRef50_Q9UTT2 Cluster: Pre-mRNA-splicing factor rse1; n=17; Di... 173 2e-42
UniRef50_Q5KP25 Cluster: Pre-mRNA-splicing factor RSE1; n=3; Dik... 171 2e-41
UniRef50_Q5CHP5 Cluster: CG13900 gene product; n=2; Cryptosporid... 168 1e-40
UniRef50_Q0V0M1 Cluster: Putative uncharacterized protein; n=1; ... 153 4e-36
UniRef50_UPI0000499BE9 Cluster: splicing factor 3B subunit 3; n=... 151 1e-35
UniRef50_Q6BYK1 Cluster: Pre-mRNA-splicing factor RSE1; n=2; Sac... 140 2e-32
UniRef50_Q6CAH5 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Yar... 128 8e-29
UniRef50_A5DFJ2 Cluster: Putative uncharacterized protein; n=1; ... 101 2e-20
UniRef50_A5DXW5 Cluster: Putative uncharacterized protein; n=1; ... 93 5e-18
UniRef50_Q5A7S5 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Can... 87 3e-16
UniRef50_Q3LWA3 Cluster: Splicing factor 3b; n=1; Bigelowiella n... 77 5e-13
UniRef50_Q2H7K6 Cluster: Putative uncharacterized protein; n=1; ... 75 1e-12
UniRef50_A7TN11 Cluster: Putative uncharacterized protein; n=1; ... 73 8e-12
UniRef50_A2DD61 Cluster: CPSF A subunit region family protein; n... 71 2e-11
UniRef50_Q753D4 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Ere... 67 4e-10
UniRef50_Q04693 Cluster: Pre-mRNA-splicing factor RSE1; n=2; Sac... 62 1e-08
UniRef50_Q57XR8 Cluster: Putative uncharacterized protein; n=1; ... 47 4e-04
UniRef50_Q6CXH8 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Klu... 46 6e-04
UniRef50_Q9M0V3 Cluster: DNA damage-binding protein 1a; n=8; Vir... 45 0.002
UniRef50_UPI0000E45ED1 Cluster: PREDICTED: similar to LOC564406 ... 44 0.002
UniRef50_A4QTE6 Cluster: Putative uncharacterized protein; n=2; ... 44 0.004
UniRef50_UPI0000498842 Cluster: splicing factor 3b subunit 3; n=... 41 0.022
UniRef50_Q5EFC9 Cluster: Sf3b complex subunit 3; n=3; Trypanosom... 40 0.038
UniRef50_O13807 Cluster: DNA damage-binding protein 1; n=1; Schi... 39 0.088
UniRef50_Q23865 Cluster: RepE; n=2; Dictyostelium discoideum|Rep... 38 0.20
UniRef50_Q4QJB3 Cluster: Putative uncharacterized protein; n=3; ... 38 0.27
UniRef50_Q21554 Cluster: Putative uncharacterized protein ddb-1;... 38 0.27
UniRef50_Q16531 Cluster: DNA damage-binding protein 1; n=44; cel... 37 0.35
UniRef50_Q55BV8 Cluster: Putative uncharacterized protein; n=1; ... 37 0.47
UniRef50_A7SP44 Cluster: Predicted protein; n=1; Nematostella ve... 37 0.47
UniRef50_Q6FLQ6 Cluster: Pre-mRNA-splicing factor RSE1; n=1; Can... 36 1.1
UniRef50_A2D9V0 Cluster: CPSF A subunit region family protein; n... 35 1.9
UniRef50_UPI0000EBEA0D Cluster: PREDICTED: similar to FGFR1 onco... 33 5.8
UniRef50_Q23JW5 Cluster: Hypothetical repeat containing protein;... 33 5.8
UniRef50_A0ADQ3 Cluster: Putative non-ribosomal peptide syntheta... 33 7.6
UniRef50_A2EEJ1 Cluster: Putative uncharacterized protein; n=1; ... 33 7.6
>UniRef50_UPI0000DA4330 Cluster: PREDICTED: similar to splicing
factor 3b, subunit 3; n=1; Rattus norvegicus|Rep:
PREDICTED: similar to splicing factor 3b, subunit 3 -
Rattus norvegicus
Length = 1216
Score = 283 bits (695), Expect = 2e-75
Identities = 129/157 (82%), Positives = 148/157 (94%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 345
M+LYNLTLQ ++ I+ A+HGNFSGTKQQEI++SRGK LELLRPDPNTGKVHTL+ +E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 346 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 525
V+RS+MAFRLTGGTKDYIVVGSDSGRI+ILEY P+KN+ EK+HQETFGKSGCRRIVPGQ+
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 526 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
L++DPKGRAVMI AIEKQKLVYILNRDA ARLTISSP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSP 157
>UniRef50_Q15393 Cluster: Splicing factor 3B subunit 3; n=64;
Eukaryota|Rep: Splicing factor 3B subunit 3 - Homo
sapiens (Human)
Length = 1217
Score = 283 bits (695), Expect = 2e-75
Identities = 129/157 (82%), Positives = 148/157 (94%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 345
M+LYNLTLQ ++ I+ A+HGNFSGTKQQEI++SRGK LELLRPDPNTGKVHTL+ +E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 346 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 525
V+RS+MAFRLTGGTKDYIVVGSDSGRI+ILEY P+KN+ EK+HQETFGKSGCRRIVPGQ+
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 526 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
L++DPKGRAVMI AIEKQKLVYILNRDA ARLTISSP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSP 157
>UniRef50_A7RHF3 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1171
Score = 266 bits (653), Expect = 2e-70
Identities = 122/157 (77%), Positives = 144/157 (91%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 345
M+LY LTLQ +SAI + +HGNFSGTKQQEI++SRGK +ELLR DPNTGKV ++ IE+FG
Sbjct: 1 MHLYALTLQRASAINNTIHGNFSGTKQQEIVVSRGKFVELLRTDPNTGKVFPVLAIEMFG 60
Query: 346 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 525
+VR ++AFRLTGG+KD+IVVGSDSGRI+ILEYIP+KN+ EKVHQETFGKSGCRRIVPGQY
Sbjct: 61 IVRDLIAFRLTGGSKDFIVVGSDSGRIVILEYIPSKNVFEKVHQETFGKSGCRRIVPGQY 120
Query: 526 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
L+ DPKGRA+MIGAIEKQKLVYI+NRD+ ARLTISSP
Sbjct: 121 LAADPKGRAIMIGAIEKQKLVYIMNRDSAARLTISSP 157
>UniRef50_Q54SA7 Cluster: CPSF domain-containing protein; n=1;
Dictyostelium discoideum AX4|Rep: CPSF domain-containing
protein - Dictyostelium discoideum AX4
Length = 1256
Score = 233 bits (570), Expect = 3e-60
Identities = 107/157 (68%), Positives = 134/157 (85%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 345
MYLYNLTLQ +++ ++ GNFSGTKQ EI+++ G++LEL+R D N GK+ +++ E+FG
Sbjct: 1 MYLYNLTLQRPTSVYQSISGNFSGTKQVEIVLNHGRSLELIRYDEN-GKMQSVLYTEVFG 59
Query: 346 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 525
+VRSI+ FRLT GTKDYI+VGSDSGR++ILEY KN +K+HQETFG+SGCRRIVPGQY
Sbjct: 60 IVRSIIPFRLTSGTKDYIIVGSDSGRVVILEYNSQKNQFDKIHQETFGRSGCRRIVPGQY 119
Query: 526 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
L++DPKGRA MIGAIEKQKLVYILNRD+ A LTISSP
Sbjct: 120 LAVDPKGRAFMIGAIEKQKLVYILNRDSSANLTISSP 156
>UniRef50_A4RYT7 Cluster: Predicted protein; n=3; Viridiplantae|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 1196
Score = 208 bits (509), Expect = 6e-53
Identities = 94/157 (59%), Positives = 123/157 (78%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 345
++LYNLTLQ SS I AV+GNFS +K QEI++ R K +ELLRPD +G+V ++ +E FG
Sbjct: 2 VHLYNLTLQKSSGINAAVYGNFSASKAQEIVVLRNKVVELLRPD-ESGRVQSVTSVEAFG 60
Query: 346 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 525
+ RSI RL G +DY+V+GSDSGR+++L++ KN KVHQET+GK+GCRRIVPGQ+
Sbjct: 61 IARSIATLRLAGANRDYLVLGSDSGRVVVLQFDKEKNAFVKVHQETYGKTGCRRIVPGQF 120
Query: 526 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
L DPKGRA+ +GA+EK KLVY++NRD EA LTISSP
Sbjct: 121 LCADPKGRAICLGAVEKNKLVYVMNRDNEANLTISSP 157
>UniRef50_Q8I574 Cluster: Splicing factor 3b, subunit 3, 130kD,
putative; n=1; Plasmodium falciparum 3D7|Rep: Splicing
factor 3b, subunit 3, 130kD, putative - Plasmodium
falciparum (isolate 3D7)
Length = 1329
Score = 200 bits (488), Expect = 2e-50
Identities = 94/155 (60%), Positives = 123/155 (79%)
Frame = +1
Query: 172 LYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVV 351
LY+LTLQ +AIT V+GNFSG + EII+++G+ LELLR D GK++ ++ +IFG++
Sbjct: 4 LYHLTLQKPTAITKTVYGNFSGPRFHEIIVAKGQVLELLRSDKQ-GKLNVIISKDIFGII 62
Query: 352 RSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQYLS 531
RSI FRLTG KDYIV+GSDSGR++ILEY KN +VH ET+GK+G RRI+PG+Y++
Sbjct: 63 RSISTFRLTGSNKDYIVIGSDSGRLVILEYNNEKNDFVRVHCETYGKTGIRRIIPGEYIA 122
Query: 532 IDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
+DPKGRA+MI A+EKQK VYILNRD + LTISSP
Sbjct: 123 VDPKGRALMICAVEKQKFVYILNRDNKENLTISSP 157
>UniRef50_Q7RIV2 Cluster: Drosophila melanogaster CG13900 gene
product; n=10; Plasmodium|Rep: Drosophila melanogaster
CG13900 gene product - Plasmodium yoelii yoelii
Length = 1235
Score = 196 bits (477), Expect = 5e-49
Identities = 91/155 (58%), Positives = 121/155 (78%)
Frame = +1
Query: 172 LYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVV 351
LY+LTLQ +AIT V+GNFSG K EI++++G+ LELLR D GK++ ++ ++FG++
Sbjct: 4 LYHLTLQKPTAITRTVYGNFSGPKAHEIVVAKGQVLELLRADKQ-GKLNVIVSKDVFGII 62
Query: 352 RSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQYLS 531
RS+ FRL G KDYI +GSDSGR++IL+Y KN +VH ET+GKSG RRI+PG+Y++
Sbjct: 63 RSLEIFRLLGSNKDYIAIGSDSGRLVILKYDDEKNDFIRVHCETYGKSGIRRIIPGEYIA 122
Query: 532 IDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
IDPKGRA+M+ AIEKQK VYILNRD + LTISSP
Sbjct: 123 IDPKGRALMLCAIEKQKFVYILNRDNKENLTISSP 157
>UniRef50_A7ATX1 Cluster: Splicing factor 3b, subunit 3, 130kD,
putative; n=1; Babesia bovis|Rep: Splicing factor 3b,
subunit 3, 130kD, putative - Babesia bovis
Length = 1169
Score = 193 bits (471), Expect = 3e-48
Identities = 90/154 (58%), Positives = 120/154 (77%)
Frame = +1
Query: 175 YNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVVR 354
++LTLQ + IT AV GNFS K QEI++ R T+ELL PD ++GK+ +L E+FG+VR
Sbjct: 5 FHLTLQRPTGITQAVQGNFSAPKAQEIVVVRSHTIELLSPD-DSGKLRSLCVSEVFGIVR 63
Query: 355 SIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQYLSI 534
+ FRLTG +DY+VV SDSGR++ILEY ++VH ET+GK+G RRIVPGQYL++
Sbjct: 64 VVSTFRLTGTQRDYLVVCSDSGRLVILEYCNVSATFKRVHCETYGKTGIRRIVPGQYLAV 123
Query: 535 DPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
DPKGRA+++GA+EK+K VYILNRD++A LTISSP
Sbjct: 124 DPKGRALIVGAVEKEKFVYILNRDSKANLTISSP 157
>UniRef50_A0ED07 Cluster: Chromosome undetermined scaffold_9, whole
genome shotgun sequence; n=3; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_9, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 1178
Score = 193 bits (471), Expect = 3e-48
Identities = 89/157 (56%), Positives = 121/157 (77%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 345
M LY+LTLQ S+ I A++GNFSG K QEI++S+ K +ELL+ + + GK+ T+ E+FG
Sbjct: 1 MQLYSLTLQKSTGIQKAIYGNFSGPKAQEIVVSKVKHIELLKINDSNGKLETIASQEVFG 60
Query: 346 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 525
++RSI +FR G +D +V+GSDSGR+++L + KN+ KVHQET+GK+GCRRIVPGQY
Sbjct: 61 IIRSIHSFRFPGNNRDNLVIGSDSGRVVVLGFDGQKNMFVKVHQETYGKTGCRRIVPGQY 120
Query: 526 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
L+ DPKGRA MI A+EK K VYIL R+ E ++TISSP
Sbjct: 121 LACDPKGRAFMISAVEKHKFVYILTRENE-KITISSP 156
>UniRef50_Q4UAB5 Cluster: Splicing factor 3b subunit, putative; n=1;
Theileria annulata|Rep: Splicing factor 3b subunit,
putative - Theileria annulata
Length = 1340
Score = 192 bits (467), Expect = 8e-48
Identities = 89/155 (57%), Positives = 118/155 (76%)
Frame = +1
Query: 172 LYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVV 351
LYNLTL+ + +T +V G+FS K QE +++R LEL + + GK+ L+ +E FG+V
Sbjct: 4 LYNLTLKKPTGVTASVQGSFSAPKAQEFVVARSHILELYSLN-SLGKLQQLVSVEAFGIV 62
Query: 352 RSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQYLS 531
R++ AFRLTG KDY+ V SDSGR++ILEY N +++H ET+GK+G RRIVPGQYL+
Sbjct: 63 RALAAFRLTGALKDYLAVTSDSGRLVILEYSTQTNSFKRIHSETYGKTGVRRIVPGQYLA 122
Query: 532 IDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
+DPKGRA+MIGAIE+QK VYILNRD +A LTISSP
Sbjct: 123 VDPKGRAIMIGAIERQKFVYILNRDTKANLTISSP 157
>UniRef50_Q4N305 Cluster: Putative uncharacterized protein; n=1;
Theileria parva|Rep: Putative uncharacterized protein -
Theileria parva
Length = 1231
Score = 189 bits (461), Expect = 4e-47
Identities = 89/155 (57%), Positives = 120/155 (77%)
Frame = +1
Query: 172 LYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVV 351
LYNLTL+ + +T +V G+FS K QE +++R LEL + + GK+ L+ +E FG+V
Sbjct: 4 LYNLTLKKPTGVTASVPGSFSAPKAQEFVVARAHVLELYGLNAS-GKLQQLVSVEAFGIV 62
Query: 352 RSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQYLS 531
R++ AFRLTG +DY+VV SDSGRI+ILEY N +++H ET+GK+G RRIVPGQYL+
Sbjct: 63 RALAAFRLTGAQRDYLVVTSDSGRIVILEYSTQTNSFKRLHCETYGKTGVRRIVPGQYLA 122
Query: 532 IDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
+DPKGRA+MIGA+E+QK VYILNRD++A LTISSP
Sbjct: 123 VDPKGRALMIGAVERQKFVYILNRDSKANLTISSP 157
>UniRef50_Q9UTT2 Cluster: Pre-mRNA-splicing factor rse1; n=17;
Dikarya|Rep: Pre-mRNA-splicing factor rse1 -
Schizosaccharomyces pombe (Fission yeast)
Length = 1206
Score = 173 bits (422), Expect = 2e-42
Identities = 81/158 (51%), Positives = 114/158 (72%)
Frame = +1
Query: 163 TMYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIF 342
+++LY+LT+Q S+ + + + SG K QEI+I+ L + + D G+++ ++ F
Sbjct: 6 SLFLYSLTIQNSNYVQSSCAASLSGKKAQEIVIATESRLLIYKVDATDGRMNCILNQNCF 65
Query: 343 GVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQ 522
G++R++ RLTG +DY+VV SDSGRI ILEY KN L ++QETFGKSG RR+VPG+
Sbjct: 66 GIIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGKSGIRRVVPGE 125
Query: 523 YLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
YL+ID KGRA MI ++EK KLVY+LNRD+EA LTISSP
Sbjct: 126 YLAIDAKGRAAMIASVEKNKLVYVLNRDSEANLTISSP 163
>UniRef50_Q5KP25 Cluster: Pre-mRNA-splicing factor RSE1; n=3;
Dikarya|Rep: Pre-mRNA-splicing factor RSE1 -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 1217
Score = 171 bits (415), Expect = 2e-41
Identities = 84/160 (52%), Positives = 118/160 (73%), Gaps = 3/160 (1%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKT-LELLRPDPNTGKVHTLMKIEIF 342
M+L NLTL + ++ AV G+FSG+K QEI+ RG T LE+ + + TG++ T++ E F
Sbjct: 1 MHLLNLTLSSPTNVSTAVVGSFSGSKSQEILCVRGGTKLEIFKLNATTGQLDTIVSTEAF 60
Query: 343 GVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYI--PTKNILEKVHQETFGKSGCRRIVP 516
G +R+I FRL G TKDYI+ SDSGR+ ILE++ PT + E ++QE FGKSG RRIVP
Sbjct: 61 GTIRNIAGFRLAGMTKDYILATSDSGRLSILEFVISPTPHF-ESLYQEVFGKSGSRRIVP 119
Query: 517 GQYLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
GQ+L++DPKGR+ ++G++EK KLVY+LNR+ E +L SSP
Sbjct: 120 GQFLAVDPKGRSCLVGSLEKTKLVYVLNRNTEGKLYPSSP 159
>UniRef50_Q5CHP5 Cluster: CG13900 gene product; n=2;
Cryptosporidium|Rep: CG13900 gene product -
Cryptosporidium hominis
Length = 1318
Score = 168 bits (408), Expect = 1e-40
Identities = 81/159 (50%), Positives = 113/159 (71%), Gaps = 3/159 (1%)
Frame = +1
Query: 169 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 348
+ Y+LTL+ +I A+ G++S K EI+++RG++LELLR D N ++ ++ ++ F +
Sbjct: 3 HFYSLTLESHGSILSAIQGSYSAAKAHEIVVNRGRSLELLRLDVNAAQIRSICLMDTFSL 62
Query: 349 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQYL 528
VRSI RL G KD IVV SDSG I+IL++ KN E++H E +GKSGCRRIVPG YL
Sbjct: 63 VRSISNLRLIGSGKDLIVVTSDSGNIVILDFNKDKNQFERIHSEPYGKSGCRRIVPGHYL 122
Query: 529 SIDPKGRAVMIGAIEKQKLVYIL---NRDAEARLTISSP 636
++DP GR++MI AIE+QKLVY L N+DA+ L ISSP
Sbjct: 123 AVDPMGRSIMIAAIERQKLVYTLTRKNKDADI-LDISSP 160
>UniRef50_Q0V0M1 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1273
Score = 153 bits (370), Expect = 4e-36
Identities = 70/158 (44%), Positives = 105/158 (66%)
Frame = +1
Query: 163 TMYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIF 342
+M LY LT++ ++ A+ G+F G +Q+I+ + G L +L + + ++F
Sbjct: 6 SMSLYALTVKQPTSTQDALTGDFIGNGKQQILTASGSRLAILEVSRRQKGFNEVYSQDVF 65
Query: 343 GVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQ 522
G++R I FR+ GGTKD+IV+ +DSGR++ EY+ + + VH ET+GKSG RR+VPG+
Sbjct: 66 GIIRRIAKFRIAGGTKDHIVITTDSGRLVTYEYVADEQTFKTVHFETYGKSGIRRVVPGE 125
Query: 523 YLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
YL+ DPKGRA+MI +IEK KLVYIL R + + ISSP
Sbjct: 126 YLAADPKGRAIMIASIEKNKLVYILTRSGQTDIAISSP 163
>UniRef50_UPI0000499BE9 Cluster: splicing factor 3B subunit 3; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: splicing factor 3B
subunit 3 - Entamoeba histolytica HM-1:IMSS
Length = 1145
Score = 151 bits (367), Expect = 1e-35
Identities = 76/158 (48%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKT-LELLRPDPNTGKVHTLMKIEIF 342
M NL+L+ + ITH++ G+FSG E++I R +T +EL R + N +V +++ +F
Sbjct: 1 MNFINLSLENTGKITHSLFGDFSGNGAIELLIVRSQTTIELYRINEND-QVLLILQESVF 59
Query: 343 GVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQ 522
++RS+ R+ KDYI++GSDSG I +L Y +N L ++ E FGKSG RR+VPG+
Sbjct: 60 CMIRSMCKIRVGSEAKDYILIGSDSGSITLLGYSSEQNKLIPIYNEIFGKSGIRRVVPGE 119
Query: 523 YLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
Y+ DP GRA MIGAIEKQKLVYI NRD+ ++TISSP
Sbjct: 120 YICSDPMGRAAMIGAIEKQKLVYIFNRDSNGKITISSP 157
>UniRef50_Q6BYK1 Cluster: Pre-mRNA-splicing factor RSE1; n=2;
Saccharomycetaceae|Rep: Pre-mRNA-splicing factor RSE1 -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 1256
Score = 140 bits (340), Expect = 2e-32
Identities = 68/159 (42%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
Frame = +1
Query: 163 TMYLYNLTLQGSSAITHAVHGNFSGTKQ-QEIIISRGKTLELLRPDPNTGKVHTLMKIEI 339
++YLYNLT++ S ++ G F G K+ QEII++ ++EL + D NTGK+ + +
Sbjct: 7 SLYLYNLTIKHPSLCIASIVGQFLGNKKSQEIILANSTSIELWKADSNTGKLEKIYQQAS 66
Query: 340 FGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPG 519
FG+++ I RL G KDY+V+ SDSG++++LE+ K + QE K+G RR PG
Sbjct: 67 FGIIQGIDKIRLVGTQKDYVVITSDSGKLVVLEFDIEKLQFVPLFQEPHSKNGLRRTSPG 126
Query: 520 QYLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
+YL +DP RA++IGAIEK KLVY + + E +L +SSP
Sbjct: 127 EYLCVDPHNRAILIGAIEKNKLVYKVQSNDEGKLELSSP 165
>UniRef50_Q6CAH5 Cluster: Pre-mRNA-splicing factor RSE1; n=1;
Yarrowia lipolytica|Rep: Pre-mRNA-splicing factor RSE1 -
Yarrowia lipolytica (Candida lipolytica)
Length = 1143
Score = 128 bits (310), Expect = 8e-29
Identities = 73/156 (46%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Frame = +1
Query: 172 LYNLTLQGSSAITHAVHGNFSGTKQQEIIISR-GKTLELLRPDPNTGKVHTLMKIEIFGV 348
LY+ TL+ SS + A+ G FSG QQ I +S G L L D +TG V +
Sbjct: 24 LYHSTLRSSSPKS-AICGRFSGKSQQVITLSSTGNALYLYSHDGDTGTVTLIHTHLTHCQ 82
Query: 349 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQYL 528
VR I AFRL G KDY++ SDSG I +LE+ N +H+E +G+SG RR+VPG++L
Sbjct: 83 VREIRAFRLPGLKKDYVIASSDSGVISVLEF--RHNRFVSLHKEAYGRSGIRRVVPGEFL 140
Query: 529 SIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
++DPKGRA M+ ++EK KLVY+LNR A + ISSP
Sbjct: 141 AVDPKGRACMLASVEKSKLVYVLNRQG-ADIVISSP 175
>UniRef50_A5DFJ2 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1206
Score = 101 bits (241), Expect = 2e-20
Identities = 51/144 (35%), Positives = 85/144 (59%), Gaps = 1/144 (0%)
Frame = +1
Query: 163 TMYLYNLTLQGSSAITHAVHGNF-SGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEI 339
+++LY+LTL +A ++ G F K QE++++ ++EL + +GK+ + ++
Sbjct: 7 SLHLYHLTLTKPTAAIKSILGQFLDNKKSQELVLATSTSIELWQFHLESGKIKQICHQQV 66
Query: 340 FGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPG 519
GV+++I R G D +V+ SDSGR+ ILE+ + V QE K+G R PG
Sbjct: 67 IGVIQNIDRIRKGGSNLDLLVITSDSGRLSILEFDKDELKFFPVVQEPHSKNGMNRTTPG 126
Query: 520 QYLSIDPKGRAVMIGAIEKQKLVY 591
+YL +DP+ R + IGAIE+ KL+Y
Sbjct: 127 EYLCVDPQDRTITIGAIERDKLMY 150
>UniRef50_A5DXW5 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 1223
Score = 93.1 bits (221), Expect = 5e-18
Identities = 48/166 (28%), Positives = 94/166 (56%), Gaps = 5/166 (3%)
Frame = +1
Query: 154 NKITMYLYNLTLQGSSAITHAVHGNF-SGTKQQEIIISRGKTLELLRPDPNTGKVHTLMK 330
N+ ++ LYNLT++ ++ +++V G F K +++++ + L D NTG + ++
Sbjct: 4 NEDSVNLYNLTVKCATNFSYSVIGRFVPHRKDEQLVLVSSSHMLLYYMDENTGSLINIVN 63
Query: 331 IEIFGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRI 510
+FGVV + +L +D +V SDSG + +L Y + + Q+ K+G +
Sbjct: 64 QNLFGVVNQVHKVQLNSN-QDALVFTSDSGNLSVLTYDEHLKKFKSILQQPIAKNGWNKT 122
Query: 511 VPGQYLSIDPKGRAVMIGAIEKQKLVYILN----RDAEARLTISSP 636
PG+YL++DP+ R +++GA+E++KL++ + + A+ ISSP
Sbjct: 123 YPGEYLAVDPQNRCILVGAVEREKLLFRIETTILENGSAKFEISSP 168
>UniRef50_Q5A7S5 Cluster: Pre-mRNA-splicing factor RSE1; n=1;
Candida albicans|Rep: Pre-mRNA-splicing factor RSE1 -
Candida albicans (Yeast)
Length = 1219
Score = 87.4 bits (207), Expect = 3e-16
Identities = 55/167 (32%), Positives = 90/167 (53%), Gaps = 6/167 (3%)
Frame = +1
Query: 154 NKITMYLYNLTLQGSSAITHAVHGNF----SGTKQ-QEIIISRGKTLELLRPDPNTGKVH 318
N ++YLYNLTL+ S ++ G F + TK Q++++ TL+L + GK+
Sbjct: 36 NDESVYLYNLTLKPPSYYISSIVGQFYKQDNSTKNAQQLVLVSSTTLQLFEINEEAGKLE 95
Query: 319 TLMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYI-PTKNILEKVHQETFGKS 495
+ G++ SI L+ D +V+ SDSG + IL+Y TK + K+ QE K+
Sbjct: 96 LQSSQNLLGIINSIEKICLS--EVDGVVITSDSGNLSILQYDNKTKKFISKI-QEPMTKN 152
Query: 496 GCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
G R G+ L+IDP+ R +++ A+EK KL Y + ++ +SSP
Sbjct: 153 GWGRNYVGENLAIDPENRCILVAAMEKNKLFYKIESNSSGSKELSSP 199
>UniRef50_Q3LWA3 Cluster: Splicing factor 3b; n=1; Bigelowiella
natans|Rep: Splicing factor 3b - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 1158
Score = 76.6 bits (180), Expect = 5e-13
Identities = 43/147 (29%), Positives = 76/147 (51%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 345
M L+N T+ S V G+F + I+ ++L + + + ++ + FG
Sbjct: 1 MKLFNFTIIRSKQYKGIVKGSFLAKDKNSTILYLPNLIDLFKVN-SLFSMNLVSSTFTFG 59
Query: 346 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 525
++R I A + ++D++++ S SG I +Y L ++ G+SGCRR+ PG Y
Sbjct: 60 IIRQIQALKFLNQSQDFLIICSGSGSFSIYKYNLNVGWL-RISNHFLGRSGCRRMTPGYY 118
Query: 526 LSIDPKGRAVMIGAIEKQKLVYILNRD 606
L D GR MI +++K + VYILN++
Sbjct: 119 LESDLIGRICMICSLDKLRYVYILNKN 145
>UniRef50_Q2H7K6 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 979
Score = 75.4 bits (177), Expect = 1e-12
Identities = 35/77 (45%), Positives = 51/77 (66%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 345
M LY+LT+Q +A T A+ G FSGTK+Q+I+ + G + LLR D G++ L+ ++FG
Sbjct: 7 MILYSLTIQPPTATTQAIIGLFSGTKEQQILTASGSRITLLRQDATLGRLSPLITQDLFG 66
Query: 346 VVRSIMAFRLTGGTKDY 396
+RSI AFRL G K +
Sbjct: 67 TIRSIAAFRLAGSAKAF 83
>UniRef50_A7TN11 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 1346
Score = 72.5 bits (170), Expect = 8e-12
Identities = 53/182 (29%), Positives = 94/182 (51%), Gaps = 21/182 (11%)
Frame = +1
Query: 154 NKITMYLYNLTLQGSSAITHAVHGNF-------SGTKQ----QEIIISRGKTLELLRP-- 294
N ++LYNLTLQ S H+ GNF +K+ Q++ + K L+L
Sbjct: 5 NDDNIFLYNLTLQKQSNYVHSCIGNFIDINSDIDSSKELKLMQDVKKKKVKELQLCIATE 64
Query: 295 ------DPNTGKVHTLMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKN 456
D + G ++ + I IF + ++ +F + ++ + SDSG + I +I
Sbjct: 65 THIELYDVSEGTLNLCITIPIFATITAMDSFVIPKAPYSFLAITSDSGVLTIARFIRESG 124
Query: 457 ILE-KVH-QETFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTIS 630
I++ K E ++G RR+ P YL+I+P GR +M+ A+E+ KL ++L+ + + ++ IS
Sbjct: 125 IIKLKTDLNEPLSRTGLRRLSPISYLNIEPYGRCLMVSAMERSKLCFLLDYE-DNKIKIS 183
Query: 631 SP 636
SP
Sbjct: 184 SP 185
>UniRef50_A2DD61 Cluster: CPSF A subunit region family protein; n=1;
Trichomonas vaginalis G3|Rep: CPSF A subunit region
family protein - Trichomonas vaginalis G3
Length = 1142
Score = 71.3 bits (167), Expect = 2e-11
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
Frame = +1
Query: 172 LYNLTLQGSSAITHAVHGNFSGTKQ---QEIIISRGKTLELLRP-DPNTGKVHTLMKIEI 339
LY+ +Q + G F+GT EI +S G + + + ++ +
Sbjct: 4 LYHSVIQPPQHVKCCTVGKFTGTSNPDYDEIAVSLGTYISIYAQIQMEQDIMKQIVNEPM 63
Query: 340 FGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPG 519
+ + ++ L KDY+VV SD+ I+I + K + +G++G RR+ PG
Sbjct: 64 YSHIYNLATLSLPKSEKDYLVVMSDAANIVIFDLHGCK--FNAIVSLPYGRTGLRRMEPG 121
Query: 520 QYLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
YL++ P GRA++ AIEK KL + + ++ E T+S+P
Sbjct: 122 YYLAVSPCGRAILASAIEKFKLAWTVTKNNENLPTVSAP 160
>UniRef50_Q753D4 Cluster: Pre-mRNA-splicing factor RSE1; n=1;
Eremothecium gossypii|Rep: Pre-mRNA-splicing factor RSE1
- Ashbya gossypii (Yeast) (Eremothecium gossypii)
Length = 1288
Score = 66.9 bits (156), Expect = 4e-10
Identities = 42/134 (31%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Frame = +1
Query: 241 KQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDSG 420
KQ +I ++ +EL D G++ L +FG + + + + G IVVG DSG
Sbjct: 54 KQLQICMATQTQVELY--DVEEGRLRRLFTRTVFGTITGLSSV-VADGRSVLIVVG-DSG 109
Query: 421 RIIIL--EYIPTKNILEKVHQETFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYI 594
++ +L +Y + LE + E +SG RR+ P ++S+DP+GR V++ A+E+ K+ Y+
Sbjct: 110 KMSVLRFKYEGGRVRLEALFNEPLSRSGVRRLSPQAHVSVDPQGRCVLLSAMERNKVCYL 169
Query: 595 LNRDAEARLTISSP 636
++ + L +SSP
Sbjct: 170 MD-VKQGELQVSSP 182
>UniRef50_Q04693 Cluster: Pre-mRNA-splicing factor RSE1; n=2;
Saccharomyces cerevisiae|Rep: Pre-mRNA-splicing factor
RSE1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1361
Score = 61.7 bits (143), Expect = 1e-08
Identities = 47/174 (27%), Positives = 92/174 (52%), Gaps = 17/174 (9%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNF----SGTK--QQEIIISRGKTLELLRPDPNTGKVHTLM 327
+YLY+LTL+ + H+ G+F +G+K Q ++ ++ LEL D G++ +
Sbjct: 58 LYLYHLTLKKQTNFVHSCIGHFVDLEAGSKREQSQLCVATETHLELY--DTADGELKLIA 115
Query: 328 KIE-IFGVVRSIMAFRLT-GGTK-------DYIVVGSDSGRIIILEYIPTKNIL--EKVH 474
K + +F + S+ + L G++ ++ + SDSG + I++ I L + +
Sbjct: 116 KFQNLFATITSMKSLDLPHSGSRAKASNWPTFLALTSDSGNLSIVQIIMHAGALRLKTLV 175
Query: 475 QETFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
+ ++ RR+ P Y+ IDP GR +++ ++E+ KL +++ D +L ISSP
Sbjct: 176 NQPLTRTTLRRVSPISYMEIDPNGRCIILSSVEQNKLCFLV--DYAQKLRISSP 227
>UniRef50_Q57XR8 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 1834
Score = 46.8 bits (106), Expect = 4e-04
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +1
Query: 466 KVHQETFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYILNRDAE 612
+V + G+SG R VPG L++DP GRAV + A+ +QK+V L + E
Sbjct: 187 RVSEVDLGRSGARLTVPGARLAVDPLGRAVFVAALMRQKIVVPLRKHEE 235
>UniRef50_Q6CXH8 Cluster: Pre-mRNA-splicing factor RSE1; n=1;
Kluyveromyces lactis|Rep: Pre-mRNA-splicing factor RSE1
- Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 1269
Score = 46.4 bits (105), Expect = 6e-04
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 6/157 (3%)
Frame = +1
Query: 184 TLQGSSAITHAVHGNFSGTKQQEI--IISRGKTLELLRPDPNTGKVHTLMKIEIFGVVRS 357
+L + A T +V G S K++E+ ++ +EL D + G + L K I + S
Sbjct: 34 SLATAEADTTSVKGPRSSKKRKELQLCLATQDCVELY--DVSNGTLDALGKWPIAATILS 91
Query: 358 IMAFRLTGGTKDYIVVGSDSGRIIILEY----IPTKNILEKVHQETFGKSGCRRIVPGQY 525
+ + + +V+ +DSG + ++ + K + + E +SG RR VP
Sbjct: 92 MTKLNMDRCSHTILVLITDSGNLTFWQFERDSVSGKVYVRTLANEPISRSGIRRFVPQYQ 151
Query: 526 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
+ DP+ R V IE+ K+ +L +L + SP
Sbjct: 152 MVSDPQSRCVFFSGIERSKMC-VLADWQRGKLVVGSP 187
Score = 34.3 bits (75), Expect = 2.5
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = +1
Query: 232 SGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVVRSIMAFRLTGGTKDYIVVGS 411
S T +E +S + +LL N G ++ E+F V S G YIV+ +
Sbjct: 881 SKTANKETSLSAIRDDKLLAT--NNGNTVVIIAKEVFNAVCSCNF----GTNVKYIVIST 934
Query: 412 DSGRIIILEYIPTKNILEKVH-QETFGKSGCRRIVP-GQYLSIDPKGRAVMIGAIEKQKL 585
+SG+ I+++ N+LE + ET S +V G L+ G V+ G +KQ L
Sbjct: 935 ESGKFIVIQIRVKNNVLETQYIHETMVHSKVNAMVSFGDKLACCILGNVVLFGLGKKQLL 994
>UniRef50_Q9M0V3 Cluster: DNA damage-binding protein 1a; n=8;
Viridiplantae|Rep: DNA damage-binding protein 1a -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1088
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/128 (20%), Positives = 65/128 (50%), Gaps = 1/128 (0%)
Frame = +1
Query: 175 YNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVVR 354
Y +T +++TH+ GNF+ ++ +I+++ +E+ P + ++ + I+G +
Sbjct: 6 YVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQ--GLQPMLDVPIYGRIA 63
Query: 355 SIMAFRLTGGTKDYIVVGSDSGRIIILEYIP-TKNILEKVHQETFGKSGCRRIVPGQYLS 531
++ FR G +D++ + ++ + +L++ P + ++ + + + G R GQ
Sbjct: 64 TLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIG-RPTDNGQIGI 122
Query: 532 IDPKGRAV 555
IDP R +
Sbjct: 123 IDPDCRLI 130
>UniRef50_UPI0000E45ED1 Cluster: PREDICTED: similar to LOC564406
protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to LOC564406 protein -
Strongylocentrotus purpuratus
Length = 338
Score = 44.4 bits (100), Expect = 0.002
Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTL---ELLRPDPNT---------- 306
MY + + + + H V+ +F QQ +++++G L ++ D N
Sbjct: 1 MYAFYREIHPPTGVEHCVYCHFFSPDQQNLVVAKGSELTVYSMITVDSNKPTDKGENSKP 60
Query: 307 -GKVHTLMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILE--KVH- 474
K+ IFG V S+ + ++TG +D +++ + ++ I+EY P + L+ +H
Sbjct: 61 KNKLEEAATFHIFGKVMSMQSAQVTGSGRDALLLSFMNAKVSIVEYDPNMHDLKTLSMHY 120
Query: 475 -QETFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYILNRD 606
+E K G R + + +DP R ++ + +V RD
Sbjct: 121 FEEDETKEGVYRNIFHPVVKVDPDHRCAIMLTYGSKLVVLPFRRD 165
>UniRef50_A4QTE6 Cluster: Putative uncharacterized protein; n=2;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 1183
Score = 43.6 bits (98), Expect = 0.004
Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Frame = +1
Query: 175 YNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVVR 354
Y + SS++ HA++ ++ +++++ LE+ R + G++ +FG +
Sbjct: 3 YIAPIHRSSSVRHALYIQLLAGEEPSLVLAKTNRLEIWRRT-DEGQLKLEHSQSVFGKIV 61
Query: 355 SIMAFRLTGGTKDYIVVGSDSGRIIILEYIP-TKNILEKVHQETFGKSGCRRIVPGQYLS 531
+ A R D + VG+D + EY P T+ ++ + G+ R +
Sbjct: 62 MLQAVRPKDSETDMLFVGTDRFKYFTAEYDPDTRELVTRQAISDLGEQFVREVSSRNRCI 121
Query: 532 IDPKGRAVMI 561
+DP GR +++
Sbjct: 122 VDPSGRYMVL 131
>UniRef50_UPI0000498842 Cluster: splicing factor 3b subunit 3; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: splicing factor 3b
subunit 3 - Entamoeba histolytica HM-1:IMSS
Length = 1108
Score = 41.1 bits (92), Expect = 0.022
Identities = 29/141 (20%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRG-KTLELLRPDPNTGKV--HTLMKIE 336
M + TL +AIT +GN + + ++ + + +E + D N + ++++
Sbjct: 1 MQFIDYTLIQPTAITSCCNGNIRSKESNDFVVVKAERKIEFITVDSNENDIVLDLFVQLD 60
Query: 337 IFGVVRSIMAFR-LTGGTKDYIVVG-SDSGRIIILEYIPTKNILEKVHQETFGKSGCRRI 510
+ V +++ + L+ DYI++ D+ II +E K +++++ E R
Sbjct: 61 SYNTVNNVLCLKNLSNNQTDYIIIALCDAINIIQMEGFKFK-LVQRIDLE----KKTERF 115
Query: 511 VPGQYLSIDPKGRAVMIGAIE 573
+ +YL++D + + + GAI+
Sbjct: 116 IKSRYLAVDEENSSFITGAIQ 136
>UniRef50_Q5EFC9 Cluster: Sf3b complex subunit 3; n=3; Trypanosoma
cruzi|Rep: Sf3b complex subunit 3 - Trypanosoma cruzi
Length = 1800
Score = 40.3 bits (90), Expect = 0.038
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 466 KVHQETFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYILNRDAE 612
+V + G+SG R VP L++DP GRAV + A+ + K++ L + E
Sbjct: 193 RVSEVVLGRSGARLTVPSARLAVDPLGRAVFVSALMRLKVLVPLRKHEE 241
>UniRef50_O13807 Cluster: DNA damage-binding protein 1; n=1;
Schizosaccharomyces pombe|Rep: DNA damage-binding
protein 1 - Schizosaccharomyces pombe (Fission yeast)
Length = 1072
Score = 39.1 bits (87), Expect = 0.088
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Frame = +1
Query: 175 YNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVVR 354
Y L S+I +AV F +I+++ LE+ + N ++ + IF +
Sbjct: 3 YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENN--RLCLITSANIFAKIV 60
Query: 355 SIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEK-VHQETFGKSGCRRIVPGQYLS 531
++ AF+ D+I+V +DS R L + N + + + + R G L
Sbjct: 61 NVKAFKPVSSPTDHIIVATDSFRYFTLFWDANDNTVSNGIKIQDCSERSLRESQSGPLLL 120
Query: 532 IDPKGRAVMI 561
+DP R + +
Sbjct: 121 VDPFQRVICL 130
>UniRef50_Q23865 Cluster: RepE; n=2; Dictyostelium discoideum|Rep:
RepE - Dictyostelium discoideum (Slime mold)
Length = 1139
Score = 37.9 bits (84), Expect = 0.20
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Frame = +1
Query: 322 LMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEY-IPTKNILEKVHQETFGKSG 498
+ + I+G + + F + G +DY+ + ++S + IL Y K I+ K G
Sbjct: 9 MFDVNIYGRISVLKLFSVAGSKQDYLFISTESFKFCILAYDYEKKEIITKASGNAEDTIG 68
Query: 499 CRRIVPGQYLSIDPKGRAVMIGAIE-KQKLVYILNRDAEARL 621
R GQ IDP GR V + E KL+ + N + ++
Sbjct: 69 -RPTEAGQLGIIDPDGRIVALHLYEGLLKLITLDNNNTPNKI 109
>UniRef50_Q4QJB3 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1980
Score = 37.5 bits (83), Expect = 0.27
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 415 SGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQK 582
SG +L K KV + G+SG R VPG + +DP G A++I A+ + K
Sbjct: 183 SGGATMLVTTSLKGRFIKVSEVCLGRSGARLTVPGARMVVDPAGTALLITALMRTK 238
>UniRef50_Q21554 Cluster: Putative uncharacterized protein ddb-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein ddb-1 - Caenorhabditis elegans
Length = 1134
Score = 37.5 bits (83), Expect = 0.27
Identities = 21/89 (23%), Positives = 46/89 (51%)
Frame = +1
Query: 175 YNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVVR 354
Y ++ + +S + +V GNF+G + +I++RG +++ P K + +I I+G V
Sbjct: 5 YCVSAKKASVVVESVVGNFTGHENVNLIVARGNRIDVQLVSPEGLK--NVCEIPIYGQVL 62
Query: 355 SIMAFRLTGGTKDYIVVGSDSGRIIILEY 441
+I + + ++V ++ + IL Y
Sbjct: 63 TIALVKCKRDKRHSLIVVTEKWHMAILAY 91
>UniRef50_Q16531 Cluster: DNA damage-binding protein 1; n=44;
cellular organisms|Rep: DNA damage-binding protein 1 -
Homo sapiens (Human)
Length = 1140
Score = 37.1 bits (82), Expect = 0.35
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 169 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 348
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 349 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTK---NILEKVHQETFGKSGCRRIVPG 519
+ + FR G +KD + + + ILEY + +I+ + H + G R G
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETG 119
Query: 520 QYLSIDPKGRAVMIGAIEKQKLVYILNRD 606
IDP+ R + + + V L+RD
Sbjct: 120 IIGIIDPECRMIGLRLYDGLFKVIPLDRD 148
>UniRef50_Q55BV8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1547
Score = 36.7 bits (81), Expect = 0.47
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGT-------KQQEIIISRGKTLELLRPDPNTGKVHTL 324
++ Y+ T+ S ITH V GNF + KQ+E++ + LE+L ++ + ++
Sbjct: 32 VFFYSKTVSNPSIITHCVGGNFRNSINDNEELKQRELVFIKDNCLEILEYFTSSQSLESI 91
Query: 325 MKIEIFGVVRSIMAFRL 375
IF +V+ I L
Sbjct: 92 NHQPIFSIVKDIKVLTL 108
Score = 33.1 bits (72), Expect = 5.8
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +1
Query: 388 KDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQYLSIDPKGRAVMIGA 567
KD++++ SDSG + +L + K V G G+ + I P R + + A
Sbjct: 202 KDFLILTSDSGYLSVLSWSNLKKQFLFVQHFKISPPGYSFKYLGEKIQISPCNRVIGVCA 261
Query: 568 IEKQKLVYILN 600
++K+ ++++N
Sbjct: 262 LKKKLSIFLVN 272
>UniRef50_A7SP44 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1420
Score = 36.7 bits (81), Expect = 0.47
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +1
Query: 310 KVHTLMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILE--KVH--Q 477
K+ + + +FG + S+ A RL G T+D +++ ++ I++Y P K+ ++ +H +
Sbjct: 63 KLELVGQHSLFGNIESLHAIRLAGNTRDSLLMSFKDAKLSIVDYDPGKHDIKTRSLHFFE 122
Query: 478 ETFGKSGCRRIVPGQYLSIDPKGR-AVMI 561
+ KS C + IDP+ R AVM+
Sbjct: 123 DEKIKSHCLAQDRAPVVRIDPERRCAVML 151
>UniRef50_Q6FLQ6 Cluster: Pre-mRNA-splicing factor RSE1; n=1;
Candida glabrata|Rep: Pre-mRNA-splicing factor RSE1 -
Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 1296
Score = 35.5 bits (78), Expect = 1.1
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLEL 285
M LY+LTLQ S H+V G+F G E++++ +EL
Sbjct: 1 MELYHLTLQRQSNYVHSVKGSFLGRDSNELVVATQTHIEL 40
>UniRef50_A2D9V0 Cluster: CPSF A subunit region family protein; n=1;
Trichomonas vaginalis G3|Rep: CPSF A subunit region
family protein - Trichomonas vaginalis G3
Length = 1297
Score = 34.7 bits (76), Expect = 1.9
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKI--EI 339
M + + T+ S A A+ + +K I+ + G L++ + ++ K EI
Sbjct: 1 MNVTHRTICDSPAPESAIRCHLPFSKADCIVTANGNKLQVYSTKEDDLRLVWEKKFWGEI 60
Query: 340 FGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSG 498
FGV R +GG D I+VG D+ ++I+L+ I N L++ F + G
Sbjct: 61 FGVYR-----HKSGGEYDSIIVGCDTSKVIVLQVI--DNDLKETEYHEFNRPG 106
>UniRef50_UPI0000EBEA0D Cluster: PREDICTED: similar to FGFR1
oncogene partner 1; n=1; Bos taurus|Rep: PREDICTED:
similar to FGFR1 oncogene partner 1 - Bos taurus
Length = 139
Score = 33.1 bits (72), Expect = 5.8
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 490 KSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYILNRDAEA 615
++GCR+I PG +S++P G+ +M G+ ++L AEA
Sbjct: 27 ETGCRQIWPGGQVSVEPGGQQLMAGSSTLCGGCFVLESAAEA 68
>UniRef50_Q23JW5 Cluster: Hypothetical repeat containing protein; n=2;
Tetrahymena thermophila SB210|Rep: Hypothetical repeat
containing protein - Tetrahymena thermophila SB210
Length = 1518
Score = 33.1 bits (72), Expect = 5.8
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +1
Query: 178 NLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPN 303
N+ L IT GNFSG Q +I+S TLEL D N
Sbjct: 960 NIILSEVQVITDFDIGNFSGNNNQLLILSNQSTLELYNIDDN 1001
>UniRef50_A0ADQ3 Cluster: Putative non-ribosomal peptide synthetase;
n=1; Streptomyces ambofaciens ATCC 23877|Rep: Putative
non-ribosomal peptide synthetase - Streptomyces
ambofaciens ATCC 23877
Length = 1067
Score = 32.7 bits (71), Expect = 7.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 289 RPDPNTGKV-HTLMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDS 417
RPDP G V HT ++ + GV + L G D+ +G DS
Sbjct: 528 RPDPPHGAVTHTALEAAVAGVCARALGLPLVGPDDDFFALGGDS 571
>UniRef50_A2EEJ1 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 577
Score = 32.7 bits (71), Expect = 7.6
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = -2
Query: 362 IIDRTTPNISIFINVWTFPVFGSGRNNSSVLPRDIIISCCLVPEKFP 222
++ PN S+ +++WTFP+ S N S++ +++ IS VP K P
Sbjct: 247 LMSPNVPNCSL-LSLWTFPLI-SKNENLSIVQKNLFISPFSVPHKAP 291
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,480,830
Number of Sequences: 1657284
Number of extensions: 13419049
Number of successful extensions: 29061
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 28274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29039
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -