Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5f18
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 173 1e-44
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 39 5e-04
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 29 0.56
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 29 0.74
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 29 0.74
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 1.7
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 27 2.3
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 27 3.0
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 27 3.0
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc... 26 4.0
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 4.0
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 26 5.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 6.9
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 6.9
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 25 6.9
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 25 6.9
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 173 bits (422), Expect = 1e-44
Identities = 81/158 (51%), Positives = 114/158 (72%)
Frame = +1
Query: 163 TMYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIF 342
+++LY+LT+Q S+ + + + SG K QEI+I+ L + + D G+++ ++ F
Sbjct: 6 SLFLYSLTIQNSNYVQSSCAASLSGKKAQEIVIATESRLLIYKVDATDGRMNCILNQNCF 65
Query: 343 GVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQ 522
G++R++ RLTG +DY+VV SDSGRI ILEY KN L ++QETFGKSG RR+VPG+
Sbjct: 66 GIIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGKSGIRRVVPGE 125
Query: 523 YLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
YL+ID KGRA MI ++EK KLVY+LNRD+EA LTISSP
Sbjct: 126 YLAIDAKGRAAMIASVEKNKLVYVLNRDSEANLTISSP 163
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 39.1 bits (87), Expect = 5e-04
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
Frame = +1
Query: 175 YNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVVR 354
Y L S+I +AV F +I+++ LE+ + N ++ + IF +
Sbjct: 3 YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENN--RLCLITSANIFAKIV 60
Query: 355 SIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEK-VHQETFGKSGCRRIVPGQYLS 531
++ AF+ D+I+V +DS R L + N + + + + R G L
Sbjct: 61 NVKAFKPVSSPTDHIIVATDSFRYFTLFWDANDNTVSNGIKIQDCSERSLRESQSGPLLL 120
Query: 532 IDPKGRAVMI 561
+DP R + +
Sbjct: 121 VDPFQRVICL 130
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 29.1 bits (62), Expect = 0.56
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +1
Query: 247 QEIIISRGKTLELLRP---DPNTGKVHTLMKIEIFGVVRSI 360
+EIII R +ELLR D NT + L IE FG+ I
Sbjct: 81 EEIIIQRNHAIELLRSASHDNNTDAMLYLANIEFFGLFEII 121
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 28.7 bits (61), Expect = 0.74
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 475 QETFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYILNRDAEAR 618
+E+ G +G ++VP + L DPK + +E++K Y LN+ E +
Sbjct: 149 EESPGPAGAAKVVPEELLETDPK-YGLTESEVEERKKKYGLNQMKEEK 195
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 28.7 bits (61), Expect = 0.74
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Frame = +1
Query: 211 HAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKV-HTLMKIEIFG--VVRSIMAFRLTG 381
H+VH GTK+ + G +L DP+ K+ +L ++ F V S +F
Sbjct: 239 HSVHN--LGTKRDSV--PSGADSDLSFKDPSGKKLSESLDLLDDFNYQVTVSNKSFVDIA 294
Query: 382 GTKDYIVVGSDSGRIIILEYI---PTKN--ILEKVHQETF 486
T+ +I + SDS I+ L YI PTKN + E H +F
Sbjct: 295 RTEYFITIYSDSNVILDLVYIDWTPTKNEIMYESFHSSSF 334
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 545 PLGSIDRY*PGTILLQPDLPNV 480
P+G D Y PG LL PD PN+
Sbjct: 90 PVGFTDSYVPGEALLCPDDPNL 111
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 271 KTLELLRPDPNTGKVHTLMKI 333
K L L+ P TGK HTL++I
Sbjct: 225 KELSLIHGPPGTGKTHTLVEI 245
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +1
Query: 88 KIKYCIEPHCGHQLLIFKGI-G*NKITMYLYNLTLQGSSAIT--HAVHGN--FSGTKQQE 252
K+ Y + G+ ++ I G NK ++ + L + IT +++H F G+K E
Sbjct: 265 KMHYIVCDTNGYLFGVYSSILGKNKWSLVMERLPIPPFDFITSLNSIHEGLLFIGSKNSE 324
Query: 253 IIISRGKTLELLRPDPNTGKVHTLMKIE 336
+ TL+ + PN G +H L+ ++
Sbjct: 325 SKLINLSTLKDVDSIPNLGPIHDLLVLK 352
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 349 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQET 483
V SI G +Y++ GSD GR I + + +IL +H ++
Sbjct: 670 VESIKNVNFYGQNDEYVMSGSDDGRFFIWDKL-NASILAIIHGDS 713
>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 359 IDRTTPNISIFINVWTFPVFGSGRNNSSVL 270
I+R SIF N+W F + G+N S++
Sbjct: 51 IERIEYLYSIFPNIWQFALLCQGQNKESLI 80
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 215 PYMEISLELSNRRLLYHVAKHLNC 286
PYM+ ++L+ + L YH++K +NC
Sbjct: 454 PYMDNFIQLAVQ-LFYHISKKVNC 476
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 5.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 169 YLYNLTLQGSSAITHAV 219
Y+Y L L+GSS ++H +
Sbjct: 358 YVYGLALEGSSGVSHVI 374
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 415 NQNQPQCNLLFLRLDEKP**TELHQIFQFSL 323
NQ+Q C++L L + K ++LH+ FQ L
Sbjct: 1981 NQSQFNCDILQLLKENKQMSSQLHECFQLLL 2011
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 6.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 325 LMCGPFPCSDLAVTIQVFC 269
L+C P PC T++ FC
Sbjct: 296 LLCHPGPCPPCTATVEKFC 314
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 6.9
Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 253 IIISRGKTLELLRPDPNTGKVHTLMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDSGRII- 429
++++ + + P+P T+ K EIF +RSI+ +T + V + + +
Sbjct: 8 VVVNNVEPTFSITPEPTFETQPTISKSEIFETLRSIL---VTKYLTTFFVQPLEVAKTVC 64
Query: 430 -ILEYIPTKNILEKVHQET 483
+ EY+P + +E+ ++T
Sbjct: 65 QVEEYLPKRTKIERDGKQT 83
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 175 YNLTLQG-SSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTG 309
+NL L +AI VHG F + + ++ S +TL L+ P +TG
Sbjct: 445 WNLVLPSVGAAIKIVVHGQFEEPQNKRLLRSFDRTL-LILPGGSTG 489
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,070
Number of Sequences: 5004
Number of extensions: 58315
Number of successful extensions: 146
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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