Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f18
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...   221   3e-58
05_04_0158 + 18613265-18615304                                         30   1.8  
05_01_0350 + 2736096-2736242,2736460-2736508,2736704-2737046,274...    29   4.1  
07_01_0943 - 7959813-7960113,7960193-7960363,7960446-7961278,796...    28   5.4  

>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score =  221 bits (541), Expect = 3e-58
 Identities = 108/172 (62%), Positives = 133/172 (77%), Gaps = 15/172 (8%)
 Frame = +1

Query: 166 MYLYNLTLQGSSAITHAVHGNFSG---------------TKQQEIIISRGKTLELLRPDP 300
           MYLY+LTLQ ++    AV G+FSG               +  QEI ++RG TLELLRPDP
Sbjct: 1   MYLYSLTLQRATGAVCAVIGSFSGRDSKKSAASGSSSSSSSTQEIAVARGTTLELLRPDP 60

Query: 301 NTGKVHTLMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQE 480
            TG++ TL+ +++FG +RS+  FRLTG TKDY+VVGSDSGR++ILEY P +N L+KVHQE
Sbjct: 61  ETGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRLDKVHQE 120

Query: 481 TFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
           TFGKSGCRRIVPGQ L++DPKGRA+ I A+EKQKLVY+LNRDA ARLTISSP
Sbjct: 121 TFGKSGCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISSP 172


>05_04_0158 + 18613265-18615304
          Length = 679

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
 Frame = +1

Query: 214 AVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVVRSIMAFRLTGGTKD 393
           A+ G  S     + +++ G+ + + RP P   +V    +I I   VR      L G +  
Sbjct: 77  ALLGRGSHGAVYKAVLASGRAVAVKRPSPRRPEVDN--EIRILSSVRGPRLVNLLGFSDS 134

Query: 394 YIVVGSDSG------RIIILEYIPTKNILEKVHQETFGKSGCRRI 510
               G+D        R++++EY+P   + E +H         RR+
Sbjct: 135 GAGAGADQQQQQHRPRLLVVEYMPNGTLYELLHSNPRPPGWPRRV 179


>05_01_0350 +
           2736096-2736242,2736460-2736508,2736704-2737046,
           2743911-2744499
          Length = 375

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 19  KRSSMACSESAILPATACAGSPVKIKYCIEPHCG 120
           K SS+A   +A+L A AC+G     +  IE  CG
Sbjct: 194 KASSLAAVAAAVLVAAACSGRAPVAEATIESTCG 227


>07_01_0943 -
           7959813-7960113,7960193-7960363,7960446-7961278,
           7961360-7961821,7961899-7962606
          Length = 824

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 265 RGKTLELLRPDPNTGKVHTLMKIEIFG-VVRSIMAFRL 375
           +GK  EL  P+P  GK  TLM +   G VVR++  F L
Sbjct: 551 KGKVGELA-PEPKRGKAATLMPVSKAGKVVRALAQFEL 587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,634,467
Number of Sequences: 37544
Number of extensions: 368980
Number of successful extensions: 699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)