Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5f18
(636 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein. 283 3e-76
BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b, sub... 283 3e-76
BC009780-1|AAH09780.1| 275|Homo sapiens SF3B3 protein protein. 283 3e-76
AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SA... 283 3e-76
U32986-1|AAA88883.1| 1140|Homo sapiens UV-damaged DNA binding fa... 37 0.052
U18299-1|AAC50349.1| 1140|Homo sapiens DDBa p127 protein. 37 0.052
L40326-1|AAA62838.1| 1140|Homo sapiens X-associated protein 1 pr... 37 0.052
BC051764-1|AAH51764.1| 1140|Homo sapiens damage-specific DNA bin... 37 0.052
BC050530-1|AAH50530.1| 1140|Homo sapiens damage-specific DNA bin... 37 0.052
BC011686-1|AAH11686.1| 1140|Homo sapiens damage-specific DNA bin... 37 0.052
AY960579-1|AAX44048.1| 1140|Homo sapiens damage-specific DNA bin... 37 0.052
AJ002955-1|CAA05770.1| 1140|Homo sapiens Xeroderma Pigmentosum G... 37 0.052
U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylat... 30 6.0
BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and polyadenyl... 30 6.0
>D87686-1|BAA32662.2| 1253|Homo sapiens KIAA0017 protein protein.
Length = 1253
Score = 283 bits (695), Expect = 3e-76
Identities = 129/157 (82%), Positives = 148/157 (94%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 345
M+LYNLTLQ ++ I+ A+HGNFSGTKQQEI++SRGK LELLRPDPNTGKVHTL+ +E+FG
Sbjct: 37 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 96
Query: 346 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 525
V+RS+MAFRLTGGTKDYIVVGSDSGRI+ILEY P+KN+ EK+HQETFGKSGCRRIVPGQ+
Sbjct: 97 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 156
Query: 526 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
L++DPKGRAVMI AIEKQKLVYILNRDA ARLTISSP
Sbjct: 157 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSP 193
>BC068974-1|AAH68974.1| 1217|Homo sapiens splicing factor 3b,
subunit 3, 130kDa protein.
Length = 1217
Score = 283 bits (695), Expect = 3e-76
Identities = 129/157 (82%), Positives = 148/157 (94%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 345
M+LYNLTLQ ++ I+ A+HGNFSGTKQQEI++SRGK LELLRPDPNTGKVHTL+ +E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 346 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 525
V+RS+MAFRLTGGTKDYIVVGSDSGRI+ILEY P+KN+ EK+HQETFGKSGCRRIVPGQ+
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 526 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
L++DPKGRAVMI AIEKQKLVYILNRDA ARLTISSP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSP 157
>BC009780-1|AAH09780.1| 275|Homo sapiens SF3B3 protein protein.
Length = 275
Score = 283 bits (695), Expect = 3e-76
Identities = 129/157 (82%), Positives = 148/157 (94%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 345
M+LYNLTLQ ++ I+ A+HGNFSGTKQQEI++SRGK LELLRPDPNTGKVHTL+ +E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 346 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 525
V+RS+MAFRLTGGTKDYIVVGSDSGRI+ILEY P+KN+ EK+HQETFGKSGCRRIVPGQ+
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 526 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
L++DPKGRAVMI AIEKQKLVYILNRDA ARLTISSP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSP 157
>AJ001443-1|CAB56791.1| 1217|Homo sapiens spliceosomal protein SAP
130 protein.
Length = 1217
Score = 283 bits (695), Expect = 3e-76
Identities = 129/157 (82%), Positives = 148/157 (94%)
Frame = +1
Query: 166 MYLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFG 345
M+LYNLTLQ ++ I+ A+HGNFSGTKQQEI++SRGK LELLRPDPNTGKVHTL+ +E+FG
Sbjct: 1 MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG 60
Query: 346 VVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQY 525
V+RS+MAFRLTGGTKDYIVVGSDSGRI+ILEY P+KN+ EK+HQETFGKSGCRRIVPGQ+
Sbjct: 61 VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF 120
Query: 526 LSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
L++DPKGRAVMI AIEKQKLVYILNRDA ARLTISSP
Sbjct: 121 LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSP 157
>U32986-1|AAA88883.1| 1140|Homo sapiens UV-damaged DNA binding
factor protein.
Length = 1140
Score = 37.1 bits (82), Expect = 0.052
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 169 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 348
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 349 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTK---NILEKVHQETFGKSGCRRIVPG 519
+ + FR G +KD + + + ILEY + +I+ + H + G R G
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETG 119
Query: 520 QYLSIDPKGRAVMIGAIEKQKLVYILNRD 606
IDP+ R + + + V L+RD
Sbjct: 120 IIGIIDPECRMIGLRLYDGLFKVIPLDRD 148
>U18299-1|AAC50349.1| 1140|Homo sapiens DDBa p127 protein.
Length = 1140
Score = 37.1 bits (82), Expect = 0.052
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 169 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 348
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 349 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTK---NILEKVHQETFGKSGCRRIVPG 519
+ + FR G +KD + + + ILEY + +I+ + H + G R G
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETG 119
Query: 520 QYLSIDPKGRAVMIGAIEKQKLVYILNRD 606
IDP+ R + + + V L+RD
Sbjct: 120 IIGIIDPECRMIGLRLYDGLFKVIPLDRD 148
>L40326-1|AAA62838.1| 1140|Homo sapiens X-associated protein 1
protein.
Length = 1140
Score = 37.1 bits (82), Expect = 0.052
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 169 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 348
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 349 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTK---NILEKVHQETFGKSGCRRIVPG 519
+ + FR G +KD + + + ILEY + +I+ + H + G R G
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETG 119
Query: 520 QYLSIDPKGRAVMIGAIEKQKLVYILNRD 606
IDP+ R + + + V L+RD
Sbjct: 120 IIGIIDPECRMIGLRLYDGLFKVIPLDRD 148
>BC051764-1|AAH51764.1| 1140|Homo sapiens damage-specific DNA
binding protein 1, 127kDa protein.
Length = 1140
Score = 37.1 bits (82), Expect = 0.052
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 169 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 348
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 349 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTK---NILEKVHQETFGKSGCRRIVPG 519
+ + FR G +KD + + + ILEY + +I+ + H + G R G
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETG 119
Query: 520 QYLSIDPKGRAVMIGAIEKQKLVYILNRD 606
IDP+ R + + + V L+RD
Sbjct: 120 IIGIIDPECRMIGLRLYDGLFKVIPLDRD 148
>BC050530-1|AAH50530.1| 1140|Homo sapiens damage-specific DNA
binding protein 1, 127kDa protein.
Length = 1140
Score = 37.1 bits (82), Expect = 0.052
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 169 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 348
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 349 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTK---NILEKVHQETFGKSGCRRIVPG 519
+ + FR G +KD + + + ILEY + +I+ + H + G R G
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETG 119
Query: 520 QYLSIDPKGRAVMIGAIEKQKLVYILNRD 606
IDP+ R + + + V L+RD
Sbjct: 120 IIGIIDPECRMIGLRLYDGLFKVIPLDRD 148
>BC011686-1|AAH11686.1| 1140|Homo sapiens damage-specific DNA
binding protein 1, 127kDa protein.
Length = 1140
Score = 37.1 bits (82), Expect = 0.052
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 169 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 348
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 349 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTK---NILEKVHQETFGKSGCRRIVPG 519
+ + FR G +KD + + + ILEY + +I+ + H + G R G
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETG 119
Query: 520 QYLSIDPKGRAVMIGAIEKQKLVYILNRD 606
IDP+ R + + + V L+RD
Sbjct: 120 IIGIIDPECRMIGLRLYDGLFKVIPLDRD 148
>AY960579-1|AAX44048.1| 1140|Homo sapiens damage-specific DNA
binding protein 1, 127kDa protein.
Length = 1140
Score = 37.1 bits (82), Expect = 0.052
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 169 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 348
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 349 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTK---NILEKVHQETFGKSGCRRIVPG 519
+ + FR G +KD + + + ILEY + +I+ + H + G R G
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETG 119
Query: 520 QYLSIDPKGRAVMIGAIEKQKLVYILNRD 606
IDP+ R + + + V L+RD
Sbjct: 120 IIGIIDPECRMIGLRLYDGLFKVIPLDRD 148
>AJ002955-1|CAA05770.1| 1140|Homo sapiens Xeroderma Pigmentosum
Group E Complementing protein protein.
Length = 1140
Score = 37.1 bits (82), Expect = 0.052
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Frame = +1
Query: 169 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 348
Y Y +T Q +A+ V G+F+ + ++I++ LE+ + + ++ ++G
Sbjct: 3 YNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEG--LRPVKEVGMYGK 60
Query: 349 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTK---NILEKVHQETFGKSGCRRIVPG 519
+ + FR G +KD + + + ILEY + +I+ + H + G R G
Sbjct: 61 IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIG-RPSETG 119
Query: 520 QYLSIDPKGRAVMIGAIEKQKLVYILNRD 606
IDP+ R + + + V L+RD
Sbjct: 120 IIGIIDPECRMIGLRLYDGLFKVIPLDRD 148
>U37012-1|AAC50293.1| 1442|Homo sapiens cleavage and polyadenylation
specificity factor protein.
Length = 1442
Score = 30.3 bits (65), Expect = 6.0
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Frame = +1
Query: 310 KVHTLMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILE--KVH--Q 477
K+ FG V S+ + +L G +D +++ ++ ++EY P + L+ +H +
Sbjct: 65 KLELAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFE 124
Query: 478 ETFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYILNRDAEA 615
E + G + V + +DP GR + + +V R++ A
Sbjct: 125 EPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLA 170
>BC017232-1|AAH17232.1| 1443|Homo sapiens cleavage and
polyadenylation specific factor 1, 160kDa protein.
Length = 1443
Score = 30.3 bits (65), Expect = 6.0
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Frame = +1
Query: 310 KVHTLMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILE--KVH--Q 477
K+ FG V S+ + +L G +D +++ ++ ++EY P + L+ +H +
Sbjct: 65 KLELAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFE 124
Query: 478 ETFGKSGCRRIVPGQYLSIDPKGRAVMIGAIEKQKLVYILNRDAEA 615
E + G + V + +DP GR + + +V R++ A
Sbjct: 125 EPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGTRLVVLPFRRESLA 170
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,189,776
Number of Sequences: 237096
Number of extensions: 2044700
Number of successful extensions: 3232
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3232
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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