Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f18
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...   222   2e-58
Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical pr...    38   0.008
U23511-10|AAC46789.3|  260|Caenorhabditis elegans Hypothetical p...    31   0.91 
AL033514-13|CAA22100.1|  721|Caenorhabditis elegans Hypothetical...    30   1.6  
AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.      29   2.1  
AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching abn...    29   2.1  
AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 203 protein.
          Length = 1220

 Score =  222 bits (542), Expect = 2e-58
 Identities = 104/158 (65%), Positives = 128/158 (81%), Gaps = 1/158 (0%)
 Frame = +1

Query: 166 MYLYNLTLQGSSAITHAVHGNFSGT-KQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIF 342
           M+LYNLTLQG SAI  A+ GNFSGT K QEI++ RG  LELL  D  TGK+  +   +IF
Sbjct: 1   MHLYNLTLQGQSAINQAIQGNFSGTPKAQEIVVGRGSALELLTLDTVTGKIKVMCHQDIF 60

Query: 343 GVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPGQ 522
           G+VRS++AFRLT GT+D+I VGSDSGRI+IL+Y   K   E++HQETFGK+GCRRIVPG 
Sbjct: 61  GIVRSLLAFRLTAGTRDFIAVGSDSGRIVILQYNAEKTCFERLHQETFGKTGCRRIVPGH 120

Query: 523 YLSIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSP 636
           +L  DP+GRA+MIGA+E+QKLVYI+NRD+EA LTISSP
Sbjct: 121 FLVGDPRGRALMIGAVERQKLVYIMNRDSEAHLTISSP 158


>Z68507-3|CAA92824.2| 1134|Caenorhabditis elegans Hypothetical
           protein M18.5 protein.
          Length = 1134

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 21/89 (23%), Positives = 46/89 (51%)
 Frame = +1

Query: 175 YNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGVVR 354
           Y ++ + +S +  +V GNF+G +   +I++RG  +++    P   K   + +I I+G V 
Sbjct: 5   YCVSAKKASVVVESVVGNFTGHENVNLIVARGNRIDVQLVSPEGLK--NVCEIPIYGQVL 62

Query: 355 SIMAFRLTGGTKDYIVVGSDSGRIIILEY 441
           +I   +     +  ++V ++   + IL Y
Sbjct: 63  TIALVKCKRDKRHSLIVVTEKWHMAILAY 91


>U23511-10|AAC46789.3|  260|Caenorhabditis elegans Hypothetical
           protein C32D5.1 protein.
          Length = 260

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 88  KIKYCIEPHCGHQLLIFKGIG*NKITMYLYN 180
           K  Y IE  CGH L + KG    K+ +YL+N
Sbjct: 65  KAFYIIEKKCGHFLAMRKGRNAEKLWLYLFN 95


>AL033514-13|CAA22100.1|  721|Caenorhabditis elegans Hypothetical
           protein Y75B8A.12 protein.
          Length = 721

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 29/117 (24%), Positives = 46/117 (39%)
 Frame = +1

Query: 169 YLYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIFGV 348
           + Y++ L           G+   TK   +  ++   L L+      GK+   +       
Sbjct: 183 FAYDVRLDSVPFTVSLFMGDGGHTKLLVLYGTKTGRLGLVSVPQGGGKILWEIDTTSGAC 242

Query: 349 VRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIPTKNILEKVHQETFGKSGCRRIVPG 519
           V +I+ F +TGG    I+VG + G I I  Y+    I E  H   FG   C   + G
Sbjct: 243 VTTIVCFNVTGGQFPDIIVGKEDGLIEI--YV----IDETDHAHLFGTFSCDESITG 293


>AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.
          Length = 1007

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 172 LYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIF 342
           L+N+ L+    +   +HG  + ++Q  ++  R   L+L R  P  G  H+  K +++
Sbjct: 683 LFNINLETDGTVNVQLHGQDTASRQLNLLDDRVHLLQLQRRTP-MGTRHSAKKYDLY 738


>AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching
           abnormal protein 2 protein.
          Length = 1007

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 172 LYNLTLQGSSAITHAVHGNFSGTKQQEIIISRGKTLELLRPDPNTGKVHTLMKIEIF 342
           L+N+ L+    +   +HG  + ++Q  ++  R   L+L R  P  G  H+  K +++
Sbjct: 683 LFNINLETDGTVNVQLHGQDTASRQLNLLDDRVHLLQLQRRTP-MGTRHSAKKYDLY 738


>AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical
           protein F59A7.1 protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 271 KTLELLRPDPNTGKVHTLMKIEIFGVVRSIMAFRLTGGTKDYIVVGSDSGRIIILEYIP 447
           KT+ L+R   + G +H +  +   G  +S   + LT  T     +G D     +++YIP
Sbjct: 287 KTVSLVRQ--HHGIIHAVCSVAPSGGTQSKAMYNLTSKTNGVCNIGEDGDFDELMDYIP 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,378,520
Number of Sequences: 27780
Number of extensions: 334256
Number of successful extensions: 866
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)