Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f08
         (270 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q83950 Cluster: ATP-dependent DNA helicase P143; n=17; ...    83   9e-16
UniRef50_Q113F8 Cluster: Putative uncharacterized protein; n=1; ...    31   6.6  

>UniRef50_Q83950 Cluster: ATP-dependent DNA helicase P143; n=17;
            Nucleopolyhedrovirus|Rep: ATP-dependent DNA helicase P143
            - Orgyia pseudotsugata multicapsid polyhedrosis virus
            (OpMNPV)
          Length = 1223

 Score = 83.4 bits (197), Expect = 9e-16
 Identities = 39/77 (50%), Positives = 50/77 (64%)
 Frame = +3

Query: 9    AVQHLKNFLHPSFVQYNYKKNINASSSKSFVFNEQVLLQQIXXXXXXXXXXXXXXXXXMT 188
            A  HLK+FLHPSF QYN  KNINA +++SFVF+E++LLQQI                 +T
Sbjct: 1147 ATLHLKSFLHPSFTQYNAAKNINAGTARSFVFDEKILLQQIKDKFKNNYDERGCKFNNLT 1206

Query: 189  MALNRNDLNTSVPNFVC 239
            MALN+ D+N +VP F C
Sbjct: 1207 MALNKLDININVPQFKC 1223


>UniRef50_Q113F8 Cluster: Putative uncharacterized protein; n=1;
           Trichodesmium erythraeum IMS101|Rep: Putative
           uncharacterized protein - Trichodesmium erythraeum
           (strain IMS101)
          Length = 699

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 18  HLKNFLHPSFVQYNYKKNINASSSKSFVFNEQ 113
           HLKN  +    +YN+KK +  SSS  F + E+
Sbjct: 11  HLKNHHNVEIERYNHKKKLPGSSSGKFCYQEK 42


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,245,991
Number of Sequences: 1657284
Number of extensions: 2186957
Number of successful extensions: 5123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5119
length of database: 575,637,011
effective HSP length: 67
effective length of database: 464,598,983
effective search space used: 10221177626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)