Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f08
         (270 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    25   0.14 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          25   0.14 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   0.77 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   0.77 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   3.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    20   4.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   5.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    20   5.4  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    19   9.5  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 25.0 bits (52), Expect = 0.14
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 224 YTSVQIVSVQRHCHVIKHIC 165
           YTS Q+V ++R  H  K++C
Sbjct: 92  YTSSQLVELEREFHRSKYLC 111


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 25.0 bits (52), Expect = 0.14
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 224 YTSVQIVSVQRHCHVIKHIC 165
           YTS Q+V ++R  H  K++C
Sbjct: 112 YTSSQLVELEREFHRSKYLC 131


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 0.77
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -2

Query: 224 YTSVQIVSVQRHCHVIKHIC 165
           YT+ Q++ +++  H  K++C
Sbjct: 11  YTNTQLLELEKEFHFNKYLC 30


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 0.77
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -2

Query: 224 YTSVQIVSVQRHCHVIKHIC 165
           YT+ Q++ +++  H  K++C
Sbjct: 142 YTNTQLLELEKEFHFNKYLC 161


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 15  QHLKNFLHPSFVQYN 59
           +++KNF  PS +Q+N
Sbjct: 573 RNIKNFNIPSILQFN 587


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 4.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 43  EGCKKFFK 20
           EGCK FFK
Sbjct: 104 EGCKGFFK 111


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.8 bits (39), Expect = 5.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 49  TNEGCKKFFK 20
           T EGCK FF+
Sbjct: 204 TCEGCKGFFR 213


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
          transcription factor protein.
          Length = 228

 Score = 19.8 bits (39), Expect = 5.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 49 TNEGCKKFF 23
          T EGCK FF
Sbjct: 21 TCEGCKSFF 29


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 96  KTLNYLRLYSFYNCTEQTRDAKSFSN 19
           K+L Y+ +    N T+Q  D   F N
Sbjct: 130 KSLIYIDMIIKKNVTQQNSDVFIFDN 155



 Score = 19.0 bits (37), Expect = 9.5
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +3

Query: 45  FVQYNYKKNINASSSKSFVFN 107
           ++    KKN+   +S  F+F+
Sbjct: 134 YIDMIIKKNVTQQNSDVFIFD 154


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,389
Number of Sequences: 336
Number of extensions: 702
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4485306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)