Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f08
         (270 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M73980-1|AAA60614.1| 2444|Homo sapiens TAN1 protein.                   29   3.5  
AL592301-5|CAI13934.1| 2555|Homo sapiens Notch homolog 1, transl...    29   3.5  
AL354671-1|CAI16149.1| 2555|Homo sapiens Notch homolog 1, transl...    29   3.5  
AF308602-1|AAG33848.1| 2556|Homo sapiens NOTCH 1 protein.              29   3.5  
AB209873-1|BAD93110.1| 2067|Homo sapiens notch1 preproprotein va...    29   3.5  
BC109119-1|AAI09120.1|  858|Homo sapiens TLR5 protein protein.         27   8.1  
BC109118-1|AAI09119.1|  858|Homo sapiens TLR5 protein protein.         27   8.1  
AL929091-1|CAM28378.1|  858|Homo sapiens toll-like receptor 5 pr...    27   8.1  
AF051151-1|AAC34376.1|  858|Homo sapiens Toll/interleukin-1 rece...    27   8.1  
AB060695-1|BAB43955.1|  858|Homo sapiens Toll-like receptor 5 pr...    27   8.1  

>M73980-1|AAA60614.1| 2444|Homo sapiens TAN1 protein.
          Length = 2444

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 240  NIQNLVH*CSNRFCSTPLSCYKTH 169
            N QNLVH C +  C     C++TH
Sbjct: 1056 NCQNLVHWCDSSPCKNGGKCWQTH 1079


>AL592301-5|CAI13934.1| 2555|Homo sapiens Notch homolog 1,
            translocation-associated (Drosophila) protein.
          Length = 2555

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 240  NIQNLVH*CSNRFCSTPLSCYKTH 169
            N QNLVH C +  C     C++TH
Sbjct: 1055 NCQNLVHWCDSSPCKNGGKCWQTH 1078


>AL354671-1|CAI16149.1| 2555|Homo sapiens Notch homolog 1,
            translocation-associated (Drosophila) protein.
          Length = 2555

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 240  NIQNLVH*CSNRFCSTPLSCYKTH 169
            N QNLVH C +  C     C++TH
Sbjct: 1055 NCQNLVHWCDSSPCKNGGKCWQTH 1078


>AF308602-1|AAG33848.1| 2556|Homo sapiens NOTCH 1 protein.
          Length = 2556

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 240  NIQNLVH*CSNRFCSTPLSCYKTH 169
            N QNLVH C +  C     C++TH
Sbjct: 1056 NCQNLVHWCDSSPCKNGGKCWQTH 1079


>AB209873-1|BAD93110.1| 2067|Homo sapiens notch1 preproprotein
           variant protein.
          Length = 2067

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 240 NIQNLVH*CSNRFCSTPLSCYKTH 169
           N QNLVH C +  C     C++TH
Sbjct: 567 NCQNLVHWCDSSPCKNGGKCWQTH 590


>BC109119-1|AAI09120.1|  858|Homo sapiens TLR5 protein protein.
          Length = 858

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 30  FLHPSFVQYNYKKNINASSSKSFVFNEQVL 119
           +LHPSF + N  K+I+ SS++ F+  E  L
Sbjct: 161 YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 190


>BC109118-1|AAI09119.1|  858|Homo sapiens TLR5 protein protein.
          Length = 858

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 30  FLHPSFVQYNYKKNINASSSKSFVFNEQVL 119
           +LHPSF + N  K+I+ SS++ F+  E  L
Sbjct: 161 YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 190


>AL929091-1|CAM28378.1|  858|Homo sapiens toll-like receptor 5
           protein.
          Length = 858

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 30  FLHPSFVQYNYKKNINASSSKSFVFNEQVL 119
           +LHPSF + N  K+I+ SS++ F+  E  L
Sbjct: 161 YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 190


>AF051151-1|AAC34376.1|  858|Homo sapiens Toll/interleukin-1
           receptor-like protein 3 protein.
          Length = 858

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 30  FLHPSFVQYNYKKNINASSSKSFVFNEQVL 119
           +LHPSF + N  K+I+ SS++ F+  E  L
Sbjct: 161 YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 190


>AB060695-1|BAB43955.1|  858|Homo sapiens Toll-like receptor 5
           protein.
          Length = 858

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 30  FLHPSFVQYNYKKNINASSSKSFVFNEQVL 119
           +LHPSF + N  K+I+ SS++ F+  E  L
Sbjct: 161 YLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 190


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,222,827
Number of Sequences: 237096
Number of extensions: 309689
Number of successful extensions: 541
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 76,859,062
effective HSP length: 67
effective length of database: 60,973,630
effective search space used: 1341419860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)