Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f07
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    31   0.16 
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    29   0.63 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    28   1.5  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   4.4  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    25   7.8  

>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +3

Query: 72  YPNRVWTIGSHWHGHYI**FIWT*AWYNQSNWYSAIDIRNIKLRAWRSCTGYKWYWC 242
           +P   W I SH++G      IW    YN      + DI ++ +RA        W+ C
Sbjct: 23  HPTEPWVIASHYNGQV---GIWN---YNTQTLVRSFDINDVPIRACAFIARKNWFVC 73


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +1

Query: 235 IGVTNTTDAKTEPPKQTKLPNEISTTVDSFKEFVKKQKSLSSEVMRVSIKPLHKVAGEAA 414
           +GV  ++   T      KL N IST  D  +  V+  K  +SE  + + + +   AG+A 
Sbjct: 202 VGVPISSHESTRSHLLRKLKNYISTKADEAQPSVEAVKGKASEKAKQAGEFVSDKAGDAK 261

Query: 415 VLTREAARVCGE 450
            L  E +   G+
Sbjct: 262 ELVNEKSSEAGQ 273


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 235 IGVTNTTDAKTEPPKQTKLPNEISTTVD-SFKEFVKKQKSLSSEVMRVSIKPLHKVAGEA 411
           +G  NT   K     ++  P+  S   D SF ++  +       + R+S  P+H+ + EA
Sbjct: 806 LGFANTNQEKLSSTVRSWFPSHRSEYHDLSFPDYSSRYSFFHYLLKRISFLPIHQKSAEA 865

Query: 412 A 414
           A
Sbjct: 866 A 866


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -1

Query: 245 VTPIPLVAGATPPSPKLDVPNVDG*VPVRLVVPSLGPNKLL 123
           V P P V G+ PP P   +P     VP    VP++ PN  L
Sbjct: 345 VMPTPQVQGSRPPPPP-PMPAPIYNVPNVPTVPTVSPNPFL 384


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 288 LGLLWWLSFSICSIRHTNTTCSRC 217
           LGL WW+ F   S  H  TT  +C
Sbjct: 197 LGLWWWMLFVTASFYH--TTFEKC 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.127    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,734
Number of Sequences: 5004
Number of extensions: 35748
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)