Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f07
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608...    29   2.6  
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352...    29   2.6  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    29   3.5  
10_01_0337 - 3711417-3711762,3712536-3712588,3712735-3712819,371...    28   6.0  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    28   6.0  

>03_06_0221 +
           32458867-32459149,32460271-32460386,32460461-32460807,
           32461231-32461411,32461507-32461629,32461828-32462115,
           32462536-32462688,32463068-32463169,32463260-32463313,
           32463518-32463624,32463867-32463927,32464019-32464150,
           32464245-32464382,32464459-32464539,32464635-32464715,
           32465133-32465213,32465300-32465413
          Length = 813

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 265 TEPPKQTKLPNEISTTVDSFKEF 333
           T PP   KLP+E++   D FKEF
Sbjct: 589 TYPPMDVKLPHELNVYQDIFKEF 611


>03_01_0458 -
           3521938-3522024,3522133-3522213,3522673-3522806,
           3523189-3523270,3523420-3523692,3523953-3524162,
           3524252-3524337,3525197-3525289,3526003-3526227,
           3526320-3526930,3529328-3529395,3529491-3529679,
           3529773-3529901,3530013-3532484
          Length = 1579

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = +2

Query: 188 EHQASGLEELHRLQVVLV*RILQMLKLSHQSKPSCQMRSQQQWIHSKNLSRNKSL*VLKL 367
           E +A+ LE +H L  +LV    + L LSH +K       + + +HS +L  N SL    L
Sbjct: 508 EERANILERIHSLFKILVKH--KNLSLSHLNKVLHITMEELRKMHSASLLLNHSLDESPL 565

Query: 368 CEC 376
           C C
Sbjct: 566 CIC 568


>02_01_0246 +
           1617326-1617367,1618903-1624419,1625040-1625498,
           1625603-1625887,1626016-1626030,1626339-1626419,
           1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 223 ATSGIGVTNTTDAKTEPPKQTKLPNE--ISTTVDSFKEFVKKQKSLSSE 363
           +T GI      +   E P +TK+P+E  ++ T  S    V K++++S+E
Sbjct: 47  STEGILKIPEDEVLVEAPSETKIPSEHSLNGTASSLNGHVNKEENISNE 95


>10_01_0337 -
           3711417-3711762,3712536-3712588,3712735-3712819,
           3713384-3713661
          Length = 253

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +1

Query: 217 APATSGIGVTNTTDAKTEPPKQTK---LPNEISTTVDSFKEFVKKQKSLSSEVMRVSIKP 387
           APA  GIG     ++++ PP + K   +P  I      F+E   K    S   +   +K 
Sbjct: 141 APAFDGIGEGGAAESRSPPPMKVKHHLMPPPIVRAPGQFQEDEVKSPEPSVHKIAAQVKK 200

Query: 388 LHK 396
           L K
Sbjct: 201 LRK 203


>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +1

Query: 280  QTKLPNEISTTVDSFKEFVKKQKSLSSEVMRVSIKPLHKVAGEAAVLTREAARVCGEV 453
            +TK   +++TTVD F E     +SL +EV  +    L +   E + L +E  R   E+
Sbjct: 2358 RTKALTKLATTVDKFDELHSLSESLLAEVENLQ-SQLQERDSEISFLRQEITRSTNEL 2414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.127    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,163,282
Number of Sequences: 37544
Number of extensions: 241422
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)