Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f07
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)            37   0.018
SB_32884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 29   2.7  
SB_59067| Best HMM Match : rve (HMM E-Value=2.1e-15)                   29   4.7  
SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)                29   4.7  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          28   6.2  

>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
          Length = 308

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +1

Query: 277 KQTKLPNEISTTVDSFKEFVKKQKSLSSEVMRVSIKPLHKV 399
           K + LP++++  V+  K++VK+QK    E+ R S   +HKV
Sbjct: 234 KDSPLPDKLNEIVEHIKKYVKEQKEHRDEISRYSASTMHKV 274


>SB_32884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 1/106 (0%)
 Frame = +1

Query: 328 EFVKKQKSLSSEVMRVSIKPLHKVAGEAAVLTREAARVCGEVXXXXXXXXXXXXXXXXXX 507
           ++VK+QK    E+ R S   +HKV  +     +  A V   +                  
Sbjct: 2   KYVKEQKEHRDEISRYSASTMHKVREDTIAQRQLLAVVLNSIQRDGCSVENLKMDVAQEL 61

Query: 508 XXXDTVLR-DNAAPGSELEGMAPPQYVKDLISELEQHLITFRRQME 642
              +   R  +  P  + E   P +Y   L+   E+ +  +++Q++
Sbjct: 62  KNAEICQRTSDIPPALQHENTLPQEYFHRLVESFEERMQVYKKQID 107


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -1

Query: 323 NESTVVEISFGSLVCFGGSVLASVVFVTPIPLVAGATPPSPKLDVPNVDG*VPVRLVVPS 144
           N  +V E +  S + FGGS L ++ F TP    +G+   + K   P+     P RL  PS
Sbjct: 267 NTQSVDEPNQASCLSFGGSPLCNLPFTTPYSFPSGSKKRNSKSPHPS----APNRLADPS 322


>SB_59067| Best HMM Match : rve (HMM E-Value=2.1e-15)
          Length = 374

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 215 LHRLQVVLV*RILQMLKLSHQSKPSCQMRSQ 307
           LH L+ V+   +LQ L  +HQ    C++R++
Sbjct: 117 LHSLRAVIAQDVLQQLHYAHQGAEKCKLRAK 147


>SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 483

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 45  SEFWSWYSNYPNRVWTIGSH 104
           SE + WYS Y    WT G+H
Sbjct: 342 SERYEWYSKYHEGTWTRGNH 361


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 21  YYINYWVGSEFWSWYSNYPNRV--WTIGSHWHGHY 119
           YY  Y+    ++ +Y  YP +V  + +  H+HGHY
Sbjct: 524 YYYYYYY---YYYYYYYYPRQVVRYPVNGHFHGHY 555


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.127    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,900,064
Number of Sequences: 59808
Number of extensions: 285909
Number of successful extensions: 612
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)