Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f07
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical...    29   3.1  
Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>AC084158-36|AAK68577.1| 1219|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.31 protein.
          Length = 1219

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 214 VAPATSGIGVTNTTDAKTEPPKQTKLPNEISTTVDSFKEFVKKQ 345
           V P T  +  T TT   T PP    + ++ S+ +D F  F KK+
Sbjct: 818 VPPTTVTVRTTKTTTTTTTPPPPPPVTSKKSSFLDLFGIFGKKE 861


>Z68106-5|CAA92129.1|  557|Caenorhabditis elegans Hypothetical
           protein F41E7.6 protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -1

Query: 395 LCSGLIDTRITSELRDFCFLTNSLNESTVVEISFGSLVCFGGSVLASVV 249
           L +G +  +I+   RDF FL++  N +     +FG+  C   ++ A  +
Sbjct: 344 LLTGSVSQKISEAERDFYFLSSKTNVNVYHYTNFGATYCKQRTLYADTI 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.127    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,671,196
Number of Sequences: 27780
Number of extensions: 204149
Number of successful extensions: 512
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)