Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f04
         (689 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O10372 Cluster: Occlusion-derived virus envelope protei...   139   7e-32
UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep: ...   121   1e-26
UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:...    85   2e-15
UniRef50_P41701 Cluster: Occlusion-derived virus envelope protei...    57   4e-07
UniRef50_Q8QL68 Cluster: ODV-E18; n=9; Nucleopolyhedrovirus|Rep:...    45   0.002
UniRef50_Q6QXM7 Cluster: ORF87; n=8; Granulovirus|Rep: ORF87 - A...    44   0.003
UniRef50_O10371 Cluster: Occlusion-derived virus envelope protei...    43   0.006
UniRef50_Q9YMV5 Cluster: LdOrf-odv-e18 peptide; n=5; Nucleopolyh...    43   0.008
UniRef50_Q1A4L9 Cluster: ODV-E27; n=1; Choristoneura occidentali...    40   0.043

>UniRef50_O10372 Cluster: Occlusion-derived virus envelope protein
           E27; n=12; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E27 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 297

 Score =  139 bits (336), Expect = 7e-32
 Identities = 66/90 (73%), Positives = 79/90 (87%)
 Frame = +3

Query: 378 MKRVKCNKVRTVTEIVNSDEKIXKTYELAEFDLKNLSSLXSYETLKIKLALSKYMAMLST 557
           MKRV+CNKVRTVTE+  ++ KI KTY+L EFDLKNLSSL S+E  K+KLALSKYMAM++T
Sbjct: 1   MKRVRCNKVRTVTEVKPNNAKIRKTYDLNEFDLKNLSSLESFENTKVKLALSKYMAMINT 60

Query: 558 LEMTQPLLEIFRNKADTRQIAAVVFSTLXF 647
           LEMTQPLLE+FRN+ADTRQI AVV +T+ F
Sbjct: 61  LEMTQPLLEVFRNRADTRQIVAVVQATMGF 90


>UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep:
           Orf13 - Trichoplusia ni SNPV
          Length = 296

 Score =  121 bits (292), Expect = 1e-26
 Identities = 59/93 (63%), Positives = 75/93 (80%), Gaps = 3/93 (3%)
 Frame = +3

Query: 378 MKRVKCN---KVRTVTEIVNSDEKIXKTYELAEFDLKNLSSLXSYETLKIKLALSKYMAM 548
           MKR KC    KVRTVTEI+NSD+K+ K Y+L EFD+KNL+SL SY+TLKIKL + KYMAM
Sbjct: 1   MKRFKCQSTPKVRTVTEIINSDDKLQKEYDLTEFDVKNLNSLESYDTLKIKLVIVKYMAM 60

Query: 549 LSTLEMTQPLLEIFRNKADTRQIAAVVFSTLXF 647
           L+TL++TQPLL IFR++  TR+I  VV ++L F
Sbjct: 61  LNTLQLTQPLLTIFRDRNATREIVTVVLASLGF 93


>UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:
           Odv-e27 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 284

 Score = 84.6 bits (200), Expect = 2e-15
 Identities = 41/87 (47%), Positives = 59/87 (67%)
 Frame = +3

Query: 396 NKVRTVTEIVNSDEKIXKTYELAEFDLKNLSSLXSYETLKIKLALSKYMAMLSTLEMTQP 575
           NKVRTVTEIVN  +K+ K +EL E + KNL+SL SY+    ++ L+KY+AML  LE +Q 
Sbjct: 5   NKVRTVTEIVNGHDKLTKEFELDELNDKNLNSLVSYDNFNTRMVLAKYIAMLHMLETSQS 64

Query: 576 LLEIFRNKADTRQIAAVVFSTLXFYTQ 656
           L+  FR++   R+I  +V ++L F  Q
Sbjct: 65  LIATFRDRNAAREIVQIVHNSLAFVHQ 91


>UniRef50_P41701 Cluster: Occlusion-derived virus envelope protein
           E18; n=7; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E18 - Autographa californica
           nuclear polyhedrosis virus (AcMNPV)
          Length = 62

 Score = 57.2 bits (132), Expect = 4e-07
 Identities = 26/30 (86%), Positives = 28/30 (93%), Gaps = 1/30 (3%)
 Frame = +1

Query: 274 PPSATG-FMNPLNATMRANPFMNTPQRQML 360
           PP+A G F+NPLNATMRANPFMNTPQRQML
Sbjct: 33  PPNALGGFVNPLNATMRANPFMNTPQRQML 62


>UniRef50_Q8QL68 Cluster: ODV-E18; n=9; Nucleopolyhedrovirus|Rep:
           ODV-E18 - Mamestra configurata NPV-A
          Length = 83

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 21/31 (67%), Positives = 23/31 (74%), Gaps = 2/31 (6%)
 Frame = +1

Query: 274 PPSATG--FMNPLNATMRANPFMNTPQRQML 360
           PP   G  F+NPLNATMRANPF+N  QR ML
Sbjct: 53  PPGGGGNTFVNPLNATMRANPFVNPAQRNML 83


>UniRef50_Q6QXM7 Cluster: ORF87; n=8; Granulovirus|Rep: ORF87 -
           Agrotis segetum granulosis virus (AsGV) (Agrotis
           segetumgranulovirus)
          Length = 298

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = +3

Query: 390 KCNKVRTVTEIVNSDEKIXKTYELAEFDLKNLSSLXSYETLKIKLALSKYMAMLSTLEMT 569
           K    RTVTEI +++    K Y++++   KN +     E  ++ L LSKY+AM+  L++ 
Sbjct: 14  KVENYRTVTEITDAENSYSKRYDVSDLVNKNEAYQRQQEKREMYLMLSKYVAMVLDLKLP 73

Query: 570 QPLLEIFRNKADTRQIAAVVFSTLXFY-TQ*IP 665
             L  +F +      I ++V+ +L F  TQ  P
Sbjct: 74  D-LKILFGSNGTPEAILSLVYHSLAFVNTQMFP 105


>UniRef50_O10371 Cluster: Occlusion-derived virus envelope protein
           E18; n=7; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E18 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 85

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 34/99 (34%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
 Frame = +1

Query: 58  MIYXXXXXXXXXXXDVQSANYLNRLTPNMFLTXXXXXXXXXXXXMFVQXXXXXXXXXXXX 237
           MIY           D    NYLNRLTPN FL             +F+Q            
Sbjct: 1   MIYTDPATGATTNTDAAGNNYLNRLTPNTFLIILAVVVIVALIIIFMQSSSNGNNS---- 56

Query: 238 XXXXXXXXXXXTPPSATGFMN-PLNATMRANPFMNTPQR 351
                      + P+A   M  PLN TMRANPF+ TPQR
Sbjct: 57  -----------SSPAAVPQMGFPLNTTMRANPFVATPQR 84


>UniRef50_Q9YMV5 Cluster: LdOrf-odv-e18 peptide; n=5;
           Nucleopolyhedrovirus|Rep: LdOrf-odv-e18 peptide -
           Lymantria dispar multicapsid nuclear polyhedrosis virus
           (LdMNPV)
          Length = 88

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 18/28 (64%), Positives = 20/28 (71%)
 Frame = +1

Query: 277 PSATGFMNPLNATMRANPFMNTPQRQML 360
           P    + NPLNATMRANPF+N  QR ML
Sbjct: 61  PQRYAYTNPLNATMRANPFVNNAQRSML 88


>UniRef50_Q1A4L9 Cluster: ODV-E27; n=1; Choristoneura occidentalis
           granulovirus|Rep: ODV-E27 - Choristoneura occidentalis
           granulovirus
          Length = 284

 Score = 40.3 bits (90), Expect = 0.043
 Identities = 23/86 (26%), Positives = 46/86 (53%)
 Frame = +3

Query: 390 KCNKVRTVTEIVNSDEKIXKTYELAEFDLKNLSSLXSYETLKIKLALSKYMAMLSTLEMT 569
           K +  RTVTEIV+S+    K +++ + + KN + L   +  ++ L ++KY   +   E+ 
Sbjct: 10  KVDSYRTVTEIVDSENFYKKEFDVTDLEYKNEAYLQKNKKRQLFLMVAKYFVEV-VKELN 68

Query: 570 QPLLEIFRNKADTRQIAAVVFSTLXF 647
            P + +  +  +T +I   V+ +L F
Sbjct: 69  IPDIRVLFDSNETDKIFTFVYYSLAF 94


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,981,388
Number of Sequences: 1657284
Number of extensions: 9104436
Number of successful extensions: 19215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19210
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)