Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f04
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253     30   2.0  
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388     30   2.0  
06_03_0757 + 24267599-24268882                                         29   3.5  
03_01_0298 + 2318836-2319051,2321238-2323106                           29   3.5  
10_07_0161 - 13674631-13675433,13675793-13675862                       28   8.0  
04_04_0463 - 25397837-25399693,25402136-25402405                       28   8.0  

>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
          Length = 326

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +3

Query: 369 CIKMKRVKCNKVRTVTEIVNSDEKIXKTYELAEFDLKNLSSLXSYETLKIKLALSKYMAM 548
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++      + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 549 LSTLEMTQ 572
             TL++ Q
Sbjct: 290 AETLDVKQ 297


>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
          Length = 327

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +3

Query: 369 CIKMKRVKCNKVRTVTEIVNSDEKIXKTYELAEFDLKNLSSLXSYETLKIKLALSKYMAM 548
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++      + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 549 LSTLEMTQ 572
             TL++ Q
Sbjct: 290 AETLDVKQ 297


>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 520 NWRSANTWLCSAPWK*PSRCWK 585
           +WR A  W+C  PW    + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369


>03_01_0298 + 2318836-2319051,2321238-2323106
          Length = 694

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 129 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 227
           A   H F HF C SSN    NYVC + +  WK+L
Sbjct: 92  AECSHEF-HFHCISSNVNHGNYVCPVCRAEWKEL 124


>10_07_0161 - 13674631-13675433,13675793-13675862
          Length = 290

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 520 NWRSANTWLCSAPWK*PSRCWK 585
           +WR A  W+C  PW      W+
Sbjct: 229 SWRPAGPWVCFNPWPAQQLAWR 250


>04_04_0463 - 25397837-25399693,25402136-25402405
          Length = 708

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 129 ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 227
           A   H+F HF C SSN    NY C I +  WK++
Sbjct: 111 AECSHMF-HFHCISSNVKHGNYFCPICRAKWKEI 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,739,737
Number of Sequences: 37544
Number of extensions: 247411
Number of successful extensions: 478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)