Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f04
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         29   4.7  
SB_43031| Best HMM Match : OEP (HMM E-Value=0.27)                      28   6.2  
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/83 (26%), Positives = 37/83 (44%)
 Frame = +3

Query: 348  KANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIXKTYELAEFDLKNLSSLXSYETLKIKLA 527
            +A + +KC ++  V+  K   V+ I   DEK+   YE+ +     L  L S     +++ 
Sbjct: 979  QAQLEEKCTELGNVESEKQYLVSMINERDEKL---YEIQDSFEAQLLDLTSSRDNDVEIL 1035

Query: 528  LSKYMAMLSTLEMTQPLLEIFRN 596
             S+  +M   L   Q   E  RN
Sbjct: 1036 RSEQESMHQVLTERQQECETLRN 1058


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/83 (26%), Positives = 37/83 (44%)
 Frame = +3

Query: 348  KANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIXKTYELAEFDLKNLSSLXSYETLKIKLA 527
            +A + +KC ++  V+  K   V+ I   DEK+   YE+ +     L  L S     +++ 
Sbjct: 927  QAQLEEKCTELGNVESEKQYLVSMINERDEKL---YEIQDSFEAQLLDLTSSRDNDVEIL 983

Query: 528  LSKYMAMLSTLEMTQPLLEIFRN 596
             S+  +M   L   Q   E  RN
Sbjct: 984  RSEQESMHQVLTERQQECETLRN 1006


>SB_43031| Best HMM Match : OEP (HMM E-Value=0.27)
          Length = 445

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +3

Query: 309 RYHAS*SLYEHA-SKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIXK-TYELAEFDLKN 482
           +Y  + + Y+HA +K  + +   K+   K    +   ++  +  K+ K TY+LA+   K 
Sbjct: 226 KYKLAKAKYKHAKAKYKLANAKYKLANAKYKLAKAKYKLAKATYKLAKATYKLAKAKYKL 285

Query: 483 LSSLXSYETLKIKLALSKY 539
             +       K KLA +KY
Sbjct: 286 AKAKYKLAKAKYKLAKAKY 304


>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = +3

Query: 387 VKCNKVRTVTEIVNSDEKIXKTYELAEFDLKNLSSLXSYETLKIK 521
           VKC + RT  EI NSD K  K    + F + NL  L     LK K
Sbjct: 57  VKCPQCRTEMEIPNSDVKRLK----SNFYINNLLDLMDETRLKAK 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,488,244
Number of Sequences: 59808
Number of extensions: 308476
Number of successful extensions: 597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)