Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f03
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9596| Best HMM Match : BAF (HMM E-Value=1.54143e-44)               117   5e-27
SB_46451| Best HMM Match : BAF (HMM E-Value=2.8e-17)                   87   1e-17
SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)                    29   2.9  
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   5.1  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            27   6.7  
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)               27   6.7  
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_55808| Best HMM Match : Pentaxin (HMM E-Value=1.2e-08)              27   8.9  
SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)                 27   8.9  
SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_21696| Best HMM Match : Pentaxin (HMM E-Value=0.051)                27   8.9  

>SB_9596| Best HMM Match : BAF (HMM E-Value=1.54143e-44)
          Length = 759

 Score =  117 bits (282), Expect = 5e-27
 Identities = 52/75 (69%), Positives = 64/75 (85%)
 Frame = +2

Query: 122 MSSTSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELF 301
           MSSTSQKH+NFV+EPMGEK VT+LAG+G VLG +    GFDKAYVVLGQFL+LKKD+E+F
Sbjct: 1   MSSTSQKHKNFVSEPMGEKLVTDLAGIGPVLGDKFTDKGFDKAYVVLGQFLLLKKDEEMF 60

Query: 302 QEWMKDACSANSKQS 346
           ++W+KD   AN KQ+
Sbjct: 61  EDWVKDTIGANKKQA 75


>SB_46451| Best HMM Match : BAF (HMM E-Value=2.8e-17)
          Length = 87

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 39/87 (44%), Positives = 55/87 (63%)
 Frame = +2

Query: 131 TSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQEW 310
           T++KH NFV EPMG K V ++ G+G    K LE  G   A+ +LG+FL+   DKE F ++
Sbjct: 2   TTKKHENFVGEPMGRKAVDKVPGIGPEHKKELERKGIHYAHQLLGEFLIRNMDKEKFGDY 61

Query: 311 MKDACSANSKQSADCYQCLKDWCDEFL 391
           +     AN+K+  DCY+ +K WCDE L
Sbjct: 62  IM-GIGANNKEKNDCYEAMKGWCDEHL 87


>SB_1208| Best HMM Match : GRAM (HMM E-Value=0.0034)
          Length = 1021

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = +2

Query: 200 VGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQE--WMKDACSANS--KQSADCYQCL 367
           +G+  G R + G F  ++ VLG F VL   + L++   W        S  + S   + C 
Sbjct: 285 LGDRFGSRDQLGNFWGSFRVLGSFRVLGSFRVLYKALIWSIAVLGLQSLLRASNQTHGCH 344

Query: 368 KDWCD 382
           +DW D
Sbjct: 345 EDWID 349


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 264 PKTT*ALSKP-PVSSRFPKTSPTPANSVTGFSPIGSATK 151
           PK T A+ +P P     P T PTPA  VT  +P  S  K
Sbjct: 86  PKPTSAIDQPLPPPPSSPSTGPTPAPPVT--APASSVNK 122


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -1

Query: 255 T*ALSKPPVSSRFPKTSPTPANSVTGFSPIGSATKFLCF 139
           T A + PPV++    ++P P +S +G S I SAT  +CF
Sbjct: 576 TPATAPPPVAATL--SAPPPLDSTSGSSTISSAT--ICF 610


>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
          Length = 1153

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 243 SKPPVSSRFPKTSPTPA-NSVTGFSPIGSATKFLCF 139
           S PP  +R P  SP P+ ++V  F P+ SA   + F
Sbjct: 335 SIPPSPNRSPAASPAPSPSAVKPFHPVSSAPSAIKF 370


>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 150  FLCFCDVLDIFVKNFVYCTYRKKQILYLSIFTKFISFFVYFVVINLI 10
            +L  CDVL  +V+ F+ CT  +  IL +     ++   V  V INL+
Sbjct: 895  YLVDCDVL--YVEGFLICTCTQGSILIVVSHGLYLVTVVCTVTINLV 939


>SB_55808| Best HMM Match : Pentaxin (HMM E-Value=1.2e-08)
          Length = 574

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 216 PKTSPTPANSVTGFSPIGSATKFLCFCDVLDIFVKN-FVYCTYRKKQILYLSIFTKFISF 40
           P T+   A ++ GF  I S T  + F   +D F K  F Y T  +  +L + +  + +S 
Sbjct: 270 PSTTGACAKTIRGFEDISSFTISVWFTTSIDNFTKTLFSYRTADQADVLRVDLRKQGVSP 329

Query: 39  FVYFVV 22
            +  VV
Sbjct: 330 NLIIVV 335


>SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)
          Length = 363

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 135 DVLDIFVKNFVYCTYRKKQILYLSIFTKF 49
           D+  IFVK  + CT     + Y +IF KF
Sbjct: 155 DMFSIFVKYLIACTLPVICLCYAAIFVKF 183


>SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 200 RPPILLLVSHPLAQQQSFYVFVMYSTFS*KTLFIVLIERNK-FYICLSLRSLLVFLC 33
           R  +LL +S  +    SF +FV YS  S ++LF+     ++  ++C S  S  +F+C
Sbjct: 1   RGSVLLYLSRTVVVSYSF-LFVCYSYLS-RSLFVCYSYLSRSLFVCYSYLSRSLFVC 55


>SB_21696| Best HMM Match : Pentaxin (HMM E-Value=0.051)
          Length = 312

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 216 PKTSPTPANSVTGFSPIGSATKFLCFCDVLDIFVKN-FVYCTYRKKQILYLSIFTKFISF 40
           P T+   A ++ GF  I S T  + F   +D F K  F Y T  +  +L + +  + +S 
Sbjct: 149 PSTTGACAKTIRGFEDISSFTISVWFTTSIDNFTKTLFSYRTADQADVLRVDLRKQGVSP 208

Query: 39  FVYFVV 22
            +  VV
Sbjct: 209 NLIIVV 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,522,397
Number of Sequences: 59808
Number of extensions: 286769
Number of successful extensions: 691
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)