Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5f03
(507 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19152-8|CAA79543.2| 89|Caenorhabditis elegans Hypothetical pr... 108 3e-24
AF303272-1|AAG50230.1| 89|Caenorhabditis elegans barrier-to-au... 108 3e-24
U50300-8|AAC48105.1| 646|Caenorhabditis elegans Hypothetical pr... 29 1.9
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 29 2.6
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 29 2.6
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 29 2.6
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 29 2.6
U46674-3|AAA85755.1| 301|Caenorhabditis elegans Hypothetical pr... 27 5.9
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 27 7.8
AC006673-11|AAF39920.1| 311|Caenorhabditis elegans Hypothetical... 27 7.8
>Z19152-8|CAA79543.2| 89|Caenorhabditis elegans Hypothetical
protein B0464.7 protein.
Length = 89
Score = 108 bits (259), Expect = 3e-24
Identities = 44/88 (50%), Positives = 61/88 (69%)
Frame = +2
Query: 128 STSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQE 307
STS KHR FV EPMG+K VT +AG+G G +L GFDKAYV+ GQ+L+LKKD++LF E
Sbjct: 2 STSVKHREFVGEPMGDKEVTCIAGIGPTYGTKLTDAGFDKAYVLFGQYLLLKKDEDLFIE 61
Query: 308 WMKDACSANSKQSADCYQCLKDWCDEFL 391
W+K+ + + + CL +W D+F+
Sbjct: 62 WLKETAGVTANHAKTAFNCLNEWADQFM 89
>AF303272-1|AAG50230.1| 89|Caenorhabditis elegans
barrier-to-autointegration factor protein.
Length = 89
Score = 108 bits (259), Expect = 3e-24
Identities = 44/88 (50%), Positives = 61/88 (69%)
Frame = +2
Query: 128 STSQKHRNFVAEPMGEKPVTELAGVGEVLGKRLETGGFDKAYVVLGQFLVLKKDKELFQE 307
STS KHR FV EPMG+K VT +AG+G G +L GFDKAYV+ GQ+L+LKKD++LF E
Sbjct: 2 STSVKHREFVGEPMGDKEVTCIAGIGPTYGTKLTDAGFDKAYVLFGQYLLLKKDEDLFIE 61
Query: 308 WMKDACSANSKQSADCYQCLKDWCDEFL 391
W+K+ + + + CL +W D+F+
Sbjct: 62 WLKETAGVTANHAKTAFNCLNEWADQFM 89
>U50300-8|AAC48105.1| 646|Caenorhabditis elegans Hypothetical
protein R03H4.6 protein.
Length = 646
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 174 SPIGSATKFLCFCDVLDIFVKNFVYCTYRKKQILYLSIFTKFISFFVY 31
S + + FLCF + F NF++ + ++++F K ISF+ Y
Sbjct: 170 SSLTTVIGFLCFAFINQQFAFNFMFLRLWQFSAGFMALFWKKISFYEY 217
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 264 PKTT*ALSKPPVSSRFPKTSPTPANSV--TGFSPIGSAT 154
P TT + KPPV+S + PT A SV +G PI ++T
Sbjct: 386 PSTT--IKKPPVASSVQRQPPTRARSVDRSGQPPISAST 422
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 264 PKTT*ALSKPPVSSRFPKTSPTPANSV--TGFSPIGSAT 154
P TT + KPPV+S + PT A SV +G PI ++T
Sbjct: 386 PSTT--IKKPPVASSVQRQPPTRARSVDRSGQPPISAST 422
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 264 PKTT*ALSKPPVSSRFPKTSPTPANSV--TGFSPIGSAT 154
P TT + KPPV+S + PT A SV +G PI ++T
Sbjct: 386 PSTT--IKKPPVASSVQRQPPTRARSVDRSGQPPISAST 422
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 264 PKTT*ALSKPPVSSRFPKTSPTPANSV--TGFSPIGSAT 154
P TT + KPPV+S + PT A SV +G PI ++T
Sbjct: 386 PSTT--IKKPPVASSVQRQPPTRARSVDRSGQPPISAST 422
>U46674-3|AAA85755.1| 301|Caenorhabditis elegans Hypothetical
protein T26A8.2 protein.
Length = 301
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 105 VYCTYRKKQILYLSIFTKFISFFVYFVVINLIKCT 1
VY TYR + + + + K ++ F YF+ I +I T
Sbjct: 8 VYRTYRSSECSWSAFYIKLVNVFRYFLPILIIFIT 42
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 237 PPVSSRFPKTSPTPANSVT-GFSPIGSATKFLCF 139
PP S+ P P P+NS+ G S G+ +KF F
Sbjct: 476 PPSSASKPALRPIPSNSLADGTSFFGNCSKFKIF 509
>AC006673-11|AAF39920.1| 311|Caenorhabditis elegans Hypothetical
protein K09D9.3 protein.
Length = 311
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -3
Query: 106 CLLYL*-KETNFI-FVYLYEVY*FFCVFC 26
CLLYL K N I F+Y Y Y +F V+C
Sbjct: 76 CLLYLIIKHPNLIEFLYRYPKYRYFSVWC 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,260,934
Number of Sequences: 27780
Number of extensions: 231291
Number of successful extensions: 740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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