Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f02
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)          35   0.080
SB_42343| Best HMM Match : DUF433 (HMM E-Value=0.96)                   31   0.99 
SB_7627| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.99 
SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)                       30   1.7  
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)                    30   1.7  
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        29   4.0  
SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)                29   5.3  
SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)               29   5.3  

>SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)
          Length = 580

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -1

Query: 358 SNDTMSNMCAQTSSVFIVCL----SVLMASLNSACISLRVKQSELHPPKCVQFLGGIVVV 191
           S  T SN+  Q  + F+ CL    + L A +++ C+ ++     + PP    +L G+ ++
Sbjct: 272 STGTYSNLKTQFKAFFLFCLYFDLTPLPADIDTVCLYVQFLSRSIAPPSIRNYLNGVKLL 331

Query: 190 YLF 182
           +LF
Sbjct: 332 HLF 334


>SB_42343| Best HMM Match : DUF433 (HMM E-Value=0.96)
          Length = 153

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 348 VSFERIKEYIRANLGHFTVITDKCSKRKVCLHHKRIARLLGIKKIYHQEYKRV 506
           +S ER+KEY++A      + T K SK + CL H      L +  I H+  KR+
Sbjct: 12  LSEERMKEYMKA------LKTKKFSKLEFCLRHPYTRSSLTVSAINHRPLKRI 58


>SB_7627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 348 VSFERIKEYIRANLGHFTVITDKCSKRKVCLHHKRIARLLGIKKIYHQEYKRV 506
           +S ER+KEY++A      + T K SK + CL H      L +  I H+  KR+
Sbjct: 12  LSEERMKEYMKA------LKTKKFSKLEFCLRHPYTRSSLTVSAINHRPLKRI 58


>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
          Length = 782

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 411 DKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAK 587
           D+ S RK  C   +   +++ I+++  Q+  R  +K+ K+  + TC       +LR CA 
Sbjct: 63  DRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVCAV 122

Query: 588 MKS 596
           ++S
Sbjct: 123 VRS 125


>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
          Length = 984

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 411  DKCSKRK-VCLHHKRIARLLGIKKIYHQEYKRVVSKVYKNQTW*TCRSNNLLQKLRPCAK 587
            D+ S RK  C   +   +++ I+++  Q+  R  +K+ K+  + TC       +LR CA 
Sbjct: 830  DRYSTRKGACAVVQSSQKMIDIRRVRRQKSMRSCAKLSKDNRYSTCTPAEEYAQLRVCAV 889

Query: 588  MKS 596
            ++S
Sbjct: 890  VRS 892


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
 Frame = +2

Query: 86  DYSNYIEFFSFVRSIKKRFDNRQLQDFFYATL----KKIDNNDAPQKLHALR-RV*FGLL 250
           DYS  I+F   V+ I K+ ++  ++   YA L    +   + D  +  H L+  V   L 
Sbjct: 373 DYSKAIQFHKLVQDIAKKTNDLSMETRAYAGLGHAYRFKGDLDEARNFHELQLEVSVQLK 432

Query: 251 DPKRNTSAVQGSHQHAQAHNEYRRRLRAHVGHRVV 355
           D      A+       Q    Y R L+ H GH  V
Sbjct: 433 DRATEGRALSNLGIIFQQQGVYARALKLHKGHLAV 467


>SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)
          Length = 595

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +2

Query: 488 SRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNF 667
           S  Q G  KG  ++   +     S T +    KN  +    ESS++ +S  D L+A ++ 
Sbjct: 343 SHEQHGELKGSGETVFYSPRAHASDTPSKKPTKNLTM----ESSTFKESEKDVLMASLDI 398

Query: 668 LEKKNINYIL 697
            +KK++N ++
Sbjct: 399 KDKKHVNTLV 408


>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
          Length = 710

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 616 RFQFIQQLFIFAHGRSFCRRLLLRHVYH 533
           RF    Q  I+AH  SF +R+LLR + H
Sbjct: 22  RFPRNPQKLIYAHQNSFKKRILLRRIEH 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,938,398
Number of Sequences: 59808
Number of extensions: 510954
Number of successful extensions: 1256
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)