Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc5f02
         (745 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047368-1|AAF24858.1| 1011|Homo sapiens nebulette protein.            32   2.5  
BC105606-1|AAI05607.1|   97|Homo sapiens HELLS protein protein.        31   4.4  
BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (D...    31   4.4  
AY091459-1|AAM12029.1|  374|Homo sapiens RNA polymerase III subu...    31   4.4  
AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (D...    31   4.4  
AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III larg...    31   4.4  

>AF047368-1|AAF24858.1| 1011|Homo sapiens nebulette protein.
          Length = 1011

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 25/99 (25%), Positives = 47/99 (47%)
 Frame = +2

Query: 449 TNCQAVGH*KNISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYN 628
           T+   + H KNI + I   ++KG  K+++ N   ++      +V   E  + +L+S    
Sbjct: 69  TDSPMLTHVKNIGAFISEAKYKGTIKADLSNSLYKRMPATIDSVFAGE--VTQLQSEVAY 126

Query: 629 KSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRK 745
           K NM  L  I+++   K    + + M V + +  +S RK
Sbjct: 127 KQNM-MLPRILSYAHMKEPPEVKHAMEVNKHQSNISYRK 164


>BC105606-1|AAI05607.1|   97|Homo sapiens HELLS protein protein.
          Length = 97

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 19/68 (27%), Positives = 34/68 (50%)
 Frame = +2

Query: 542 MPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQD 721
           M E++   E A + +  K+L K   S   +S   +   + + LEK NI Y   ++  M+ 
Sbjct: 30  MLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNI-YSKFLLTKMEQ 88

Query: 722 ERKMSKRK 745
           ++K  K+K
Sbjct: 89  QKKKKKKK 96


>BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (DNA
           directed) polypeptide A, 155kDa protein.
          Length = 1390

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +3

Query: 405 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 527
           I+DKC K+ +C H        +  G+ KI H++Y   K+VV  +  N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192


>AY091459-1|AAM12029.1|  374|Homo sapiens RNA polymerase III subunit
           RPC155-A protein.
          Length = 374

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +3

Query: 405 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 527
           I+DKC K+ +C H        +  G+ KI H++Y   K+VV  +  N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192


>AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (DNA
           directed) (155kD) (RPC155) protein.
          Length = 1390

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +3

Query: 405 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 527
           I+DKC K+ +C H        +  G+ KI H++Y   K+VV  +  N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192


>AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III largest
           subunit protein.
          Length = 1391

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +3

Query: 405 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 527
           I+DKC K+ +C H        +  G+ KI H++Y   K+VV  +  N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,068,443
Number of Sequences: 237096
Number of extensions: 2216603
Number of successful extensions: 4980
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4980
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)