Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5e19
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 104 8e-24
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 79 4e-16
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 38 0.001
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 31 0.086
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 31 0.11
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 27 1.4
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 27 1.9
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 27 2.5
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 5.7
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha... 25 5.7
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 5.7
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,... 25 9.9
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac... 25 9.9
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 25 9.9
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 104 bits (250), Expect = 8e-24
Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 6/157 (3%)
Frame = +2
Query: 92 WYYDKKDLLNTPSFRDGINNDAENRYRKEGARFIIDTGSKMDLGYNTVATGVVYFHRFYM 271
W K L+ TPS DGI D E R +G FII+ G ++ L +AT +YFHRFY+
Sbjct: 18 WIISKDQLVFTPSALDGIPLDQEEIQRSKGCNFIINVGLRLKLPQTALATANIYFHRFYL 77
Query: 272 FHSFRTFPRYITACCCLFLAGKVEETPKKCKDII----KVAKSLLTELKFASFGE--NPK 433
S + + Y A C+FLA KVE++ +K +DI+ KVA+ L E +
Sbjct: 78 RFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAKVAQKNSNVLVDEQTKEYWRWR 137
Query: 434 EEVMTLERILLQTIKFDFQVXHPYGYLLKYAKCLKGD 544
+ ++ E +LL+ + FDF V HPY Y+L + K D
Sbjct: 138 DVILYTEEVLLEALCFDFTVEHPYPYVLSFIKKFVAD 174
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 79.0 bits (186), Expect = 4e-16
Identities = 46/159 (28%), Positives = 78/159 (49%)
Frame = +2
Query: 62 NKTSASKMPYWYYDKKDLLNTPSFRDGINNDAENRYRKEGARFIIDTGSKMDLGYNTVAT 241
N + +M + YY +K++ S RD EN R + +I + T
Sbjct: 6 NHVLSIRMSHPYYSEKEISRILSTRD----PKENNLRMQAFAWISTLSKTLKFPVRTSGL 61
Query: 242 GVVYFHRFYMFHSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKVAKSLLTELKFASFG 421
++ + RF +F P A CL +A K+E+T KK +DI+ L + +
Sbjct: 62 AMLLYSRFQLFFPVNEIPLLECATACLVVASKIEDTAKKFRDILLA--HYLQKHPGSEVD 119
Query: 422 ENPKEEVMTLERILLQTIKFDFQVXHPYGYLLKYAKCLK 538
+ ++ ++ LER+ L+ I FDF+V HP+ Y++K+AK LK
Sbjct: 120 AHSQKRILGLERMTLELICFDFRVRHPHNYMVKFAKSLK 158
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 37.9 bits (84), Expect = 0.001
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Frame = +2
Query: 146 NNDAENRYRKEGA--RFIIDTGSKMDLGYNTVATGVVYFHRFYMFHSFRTFPRYITACCC 319
N E R+ A FI++ + DL +T+ + + + AC C
Sbjct: 119 NQQPELRWSMRPALVNFIVEIHNGFDLSIDTLPLSISLMDSYVSRRVVYCKHIQLVACVC 178
Query: 320 LFLAGKVEETPKKCKDIIKVAKSLLTELKFASFGENPKEEVMTLERILLQTIKFDFQVXH 499
L++A K ET + LL ELK A ++ + +ER +L T+ +D +
Sbjct: 179 LWIASKFHETEDRVP--------LLQELKLACKNIYAEDLFIRMERHILDTLDWDISIPT 230
Query: 500 PYGYL 514
P Y+
Sbjct: 231 PASYI 235
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 31.5 bits (68), Expect = 0.086
Identities = 26/100 (26%), Positives = 45/100 (45%)
Frame = +2
Query: 206 SKMDLGYNTVATGVVYFHRFYMFHSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKVAK 385
S + L + +T +++F RFY+ +S + I + LFLA KC D
Sbjct: 82 SALSLPTHIRSTAILFFKRFYLINSVMEYSPKIISFTSLFLA-------TKCND-----H 129
Query: 386 SLLTELKFASFGENPKEEVMTLERILLQTIKFDFQVXHPY 505
+ E + + EEV+ E + Q++K+D V P+
Sbjct: 130 YISIEQFCKNMPKTTPEEVLEYEFNVCQSLKWDLYVWLPF 169
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 31.1 bits (67), Expect = 0.11
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = +2
Query: 203 GSKMDLGYNTVATGVVYFHRFYMF-HSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKV 379
G ++ L +AT +V R+ + + + F C++L+ KVEE P + I
Sbjct: 43 GDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNE 102
Query: 380 AK---SLLTELKFASFGENPKEEVMTLERILL 466
A SL +L ++ E E + L+ L+
Sbjct: 103 ANDLWSLKVKLSRSNISEIEFEIISVLDAFLI 134
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = +2
Query: 110 DLLNTPSFRDGINNDA-ENRYRKEGARF----IIDTGSKMDL 220
D+ N P F DGIN +R + RF I +T SK+DL
Sbjct: 51 DVENFPGFPDGINGTTLTENFRAQSLRFGTEIITETVSKLDL 92
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 290 FPRYITACCCLFLAGKVEETPKKCKDIIKVAK 385
FP YI+ CC +A + P+K + + AK
Sbjct: 270 FPSYISEDCCSLIAAMLNVNPRKRCSLEQAAK 301
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 221 LSPF*I-LCRL*ISLLPFCNDSQHRCLSH 138
LSP I LC+ ++L PFC S H L H
Sbjct: 530 LSPAAIDLCQKLLALNPFCRPSAHETLMH 558
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 5.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 414 LANFSSVNKDLATLIISLHFFGVSSTFPA 328
L F +KDL +++S HF VS+ + A
Sbjct: 129 LVKFEGKSKDLFPILLSAHFDSVSTGYGA 157
>SPBC14F5.12c |cbh2||centromere binding protein
Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 258 IVFTCFIRSGRFRGT*PL 311
I++ CF+RSG F+ PL
Sbjct: 379 IIYNCFLRSGLFQNQQPL 396
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 320 LFLAGKVEETPKKCKDIIKVAKSLLTELKFASFGENPKEEVMTLERILLQTIKFD 484
++LA + + +K+ ++ L+ G N +EEV+ L R + Q IK +
Sbjct: 830 MYLANYFQALKTEGTSSVKIRHAVYLVLQIFGHGSNRREEVLLL-RFISQVIKLE 883
>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 546
Score = 24.6 bits (51), Expect = 9.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 68 TSASKMPYWYYDKKD 112
T S++P WYYDK +
Sbjct: 396 TRFSQLPSWYYDKTE 410
>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 396 VNKDLATLIISLHFFGVSSTFPARNKQQQAVM 301
++K + TLII+ FF T +NK ++ ++
Sbjct: 2 ISKTIKTLIITKIFFSFKQTKRKKNKNKKRIL 33
>SPCC18B5.11c |cds1||replication checkpoint kinase
Cds1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 179 LPFCNDSQHRCLSHHGRKAYSTNPFCHN 96
+PF + SQ +C+ + AY P N
Sbjct: 373 IPFASSSQAKCIELISKGAYPIEPLLEN 400
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 247 CLFSSFLHVSFVQDVSEVHNRLL 315
C F SFL+V+ Q+V + RLL
Sbjct: 40 CAFESFLYVAVGQEVRSLDCRLL 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,056
Number of Sequences: 5004
Number of extensions: 49736
Number of successful extensions: 136
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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