Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5e19
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0357 + 2715271-2715509,2716200-2716281,2717117-2717251,271... 94 8e-20
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 57 4e-19
02_03_0032 + 14112354-14112417,14112471-14112549,14114435-141145... 86 2e-17
02_01_0262 - 1734447-1735090,1735219-1735367,1735458-1735633,173... 78 4e-15
01_04_0064 - 15600467-15600528,15600606-15600647,15600732-156011... 55 4e-08
09_04_0441 + 17626285-17626620,17626726-17626812,17627195-176272... 34 0.088
06_03_1476 - 30399317-30399347,30399636-30399722,30400035-304001... 33 0.12
12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730 31 0.82
05_03_0131 + 8779006-8779073,8779517-8779662,8779739-8780794,878... 29 2.5
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308... 29 3.3
02_05_0354 - 28245422-28245844 29 3.3
03_01_0269 + 2080338-2080508,2081086-2081335,2081432-2082648,208... 28 4.4
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 27 7.6
>11_01_0357 +
2715271-2715509,2716200-2716281,2717117-2717251,
2717428-2717457,2717486-2717661,2717743-2717894,
2718395-2719083
Length = 500
Score = 93.9 bits (223), Expect = 8e-20
Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 19/168 (11%)
Frame = +2
Query: 92 WYYDKKDLL-NTPSFRDGINNDAENRYRKEGARFIIDTGSKMDLGYNTVATGVVYFHRFY 268
WY+ +K++ N+ S RDGI+ E+ RK F+ D G ++ + T+AT +V+ HRF+
Sbjct: 37 WYFSRKEIEENSLSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFF 96
Query: 269 MFHSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKVAKSLLTELKFAS----------- 415
+ S R A C+FLAGKVEETP+ KD+I ++ ++ + A+
Sbjct: 97 LRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKKDAAAVQRIKQKSLDY 156
Query: 416 FG-------ENPKEEVMTLERILLQTIKFDFQVXHPYGYLLKYAKCLK 538
FG E KE ++ ER++L T+ FD V HPY L++ K K
Sbjct: 157 FGVEWQEVYEQQKELILLGERVVLVTLGFDLNVHHPYKPLVEAIKKFK 204
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 57.2 bits (132), Expect(2) = 4e-19
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Frame = +2
Query: 308 ACCCLFLAGKVEETPKKCKDIIKVAKSLL--------TELKFASFGENPKEEVMTLERIL 463
A C+FLAGKVEETP+ KD+I V+ ++ +K + KE ++ ER++
Sbjct: 137 ATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQKEVYDQQKELILLAERVV 196
Query: 464 LQTIKFDFQVXHPYGYLLKYAKCLK 538
L T+ FD V HPY L++ + K
Sbjct: 197 LATLGFDLNVHHPYKPLVEAIRKFK 221
Score = 54.8 bits (126), Expect(2) = 4e-19
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +2
Query: 92 WYYDKKDLL-NTPSFRDGINNDAENRYRKEGARFIIDTGSKMDLGYNTVATGVVYFHRFY 268
WY+ +K++ N+PS RDGI+ E+ RK F+ D G ++ + T+AT +V+ HRFY
Sbjct: 36 WYFSRKEIEENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFY 95
Query: 269 MFHS 280
+ S
Sbjct: 96 LRQS 99
>02_03_0032 +
14112354-14112417,14112471-14112549,14114435-14114551,
14114721-14114802,14115734-14115868,14115948-14116123,
14116219-14116370,14116433-14117622
Length = 664
Score = 86.2 bits (204), Expect = 2e-17
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Frame = +2
Query: 122 TPSFRDGINNDAENRYRKEGARFIIDTGSKMDLGYNTVATGVVYFHRFYMFHSFRTFPRY 301
+PS +DGI E+ R+ FI D G ++ L T+AT +++ HRFY++ S
Sbjct: 55 SPSRKDGITEIMESEIRQLYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSLAKNGWQ 114
Query: 302 ITACCCLFLAGKVEETPKKCKDIIKVAKSLL--------TELKFASFGENPKEEVMTLER 457
A C+FLA KVE+TP +I+VA + + E K ++T ER
Sbjct: 115 TIATVCIFLASKVEDTPCPLDQVIRVAYGTMYRRDPATARRIHQKDVFEKQKALILTGER 174
Query: 458 ILLQTIKFDFQVXHPYGYLL 517
++L T++FDF + HPY LL
Sbjct: 175 LVLTTVRFDFNIQHPYRPLL 194
>02_01_0262 -
1734447-1735090,1735219-1735367,1735458-1735633,
1735719-1735853,1737039-1737120,1737307-1737461
Length = 446
Score = 78.2 bits (184), Expect = 4e-15
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Frame = +2
Query: 92 WYYDKKDL-LNTPSFRDGINNDAENRYRKEGARFIIDTGSKMDLGYNTVATGVVYFHRFY 268
WY + ++ +PS RDG+ E R FI D G ++ L T+AT + HRFY
Sbjct: 9 WYVTRDEVERGSPSRRDGVGAAKEAELRATYCSFIRDVGLRLQLPQVTIATATLLCHRFY 68
Query: 269 MFHSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKVAKSLL--------TELKFASFGE 424
+ S A C+FLA K+E+TP + +I VA + + E
Sbjct: 69 LRQSHAKNEWQTVATVCVFLASKIEDTPCPLQRVIIVAYETMYRKDCNAAHRIYQKEVLE 128
Query: 425 NPKEEVMTLERILLQTIKFDFQVXHPY 505
KE ++ E +LL TI+FDF + HPY
Sbjct: 129 KQKELILVGETLLLSTIRFDFNIQHPY 155
>01_04_0064 -
15600467-15600528,15600606-15600647,15600732-15601107,
15601186-15601447,15602992-15603158,15603344-15603484,
15603575-15603643
Length = 372
Score = 54.8 bits (126), Expect = 4e-08
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Frame = +2
Query: 233 VATGVVYFHRFYMFHSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKVAKSLLTELK-- 406
+AT V FHRFY SF F A C++LAGK+EE+P++ K II V + +
Sbjct: 1 MATAQVLFHRFYCKKSFVRFSVKRVAASCVWLAGKLEESPRRSKHIIIVFHRMECRRENV 60
Query: 407 -------FASFGENPKEEVMTLERILLQTIKFDFQVXHPYGYLLKYAKCLK 538
F+ + K +++ ER LL+ + F V HP+ ++ Y L+
Sbjct: 61 PIEHLDVFSKKYSDLKHDLVRTERHLLKEMGFICHVEHPHKFISNYLATLE 111
>09_04_0441 +
17626285-17626620,17626726-17626812,17627195-17627293,
17627431-17627632,17627735-17627832,17628050-17628298
Length = 356
Score = 33.9 bits (74), Expect = 0.088
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 3/137 (2%)
Frame = +2
Query: 140 GINNDAENRYRKEGARFIIDTGSKMDLGYNTVATGVVYFHRF---YMFHSFRTFPRYITA 310
G + D + R R + +I S T V Y RF Y + + + A
Sbjct: 93 GGDGDLDLRVRMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLA 152
Query: 311 CCCLFLAGKVEETPKKCKDIIKVAKSLLTELKFASFGENPKEEVMTLERILLQTIKFDFQ 490
CL LA K+EET V +SL ++ + K + +E ++L T+K+ Q
Sbjct: 153 VACLSLAAKMEET--------DVPQSLDLQVGEERYVFEAK-TIQRMELLVLSTLKWRMQ 203
Query: 491 VXHPYGYLLKYAKCLKG 541
P+ Y+ + + L G
Sbjct: 204 AVTPFSYVDYFLRELNG 220
>06_03_1476 -
30399317-30399347,30399636-30399722,30400035-30400192,
30400276-30400497,30400744-30400881,30400977-30401105,
30401346-30401369,30401569-30401614,30401692-30401773,
30401836-30401955,30402039-30402072
Length = 356
Score = 33.5 bits (73), Expect = 0.12
Identities = 10/38 (26%), Positives = 25/38 (65%)
Frame = +2
Query: 431 KEEVMTLERILLQTIKFDFQVXHPYGYLLKYAKCLKGD 544
+ +++ +ER+++ T++FD V PY ++ ++ K + D
Sbjct: 259 RTDILEMERMIVNTLQFDMSVPTPYCFMRRFLKAAQSD 296
>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
Length = 802
Score = 30.7 bits (66), Expect = 0.82
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -1
Query: 463 QNSFECHYFLFRIFTETSKL*FRQQRLGNFNYIFAFL 353
+ FE +YFL + S L R Q L +FN IF FL
Sbjct: 620 EKDFEVNYFLVMVDMAISSLKSRFQELQSFNGIFGFL 656
>05_03_0131 +
8779006-8779073,8779517-8779662,8779739-8780794,
8781070-8781232,8781423-8781494,8782076-8782147,
8782643-8782815,8782958-8783163,8783277-8783403,
8783793-8783864,8783984-8784176,8784298-8784768,
8785635-8785740
Length = 974
Score = 29.1 bits (62), Expect = 2.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3
Query: 188 ISLLPFCNDSQHRCL 144
+SL+ +CND +HRCL
Sbjct: 665 VSLIGYCNDKKHRCL 679
>03_02_0924 +
12429764-12430120,12430562-12430637,12430803-12430849,
12431850-12431962,12432056-12432129,12432258-12432353,
12432440-12432559,12432660-12432893,12433486-12433634,
12434145-12434301,12434387-12434542,12435359-12435735,
12435871-12436020,12437071-12437253,12437440-12437643,
12437869-12437975,12438253-12438406,12438796-12438917,
12439541-12439787
Length = 1040
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 465 SKILSSVITSSLGFSPKLANFSSVNKDL 382
S +LSS++ +S FSPK F + +DL
Sbjct: 681 STLLSSILAASQSFSPKSDRFEVIKEDL 708
>02_05_0354 - 28245422-28245844
Length = 140
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 352 WCLFDFSRQKQTAASGYVPRK--RPERMKHVKTMKINNPCGNSI 227
W L+ + + T G+ PR R R +HV+T K + CG ++
Sbjct: 86 WWLWRWQWRLSTVVQGHHPRLTVRHRRQRHVETGKEESGCGRAV 129
>03_01_0269 +
2080338-2080508,2081086-2081335,2081432-2082648,
2082933-2083083,2083247-2083563
Length = 701
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 332 GKVEETPKKCKDIIKVAKSLLTELKFASFGEN 427
GK+EE K+C I+ V +S L E FG++
Sbjct: 137 GKIEEATKECSSILDVVESALPEGLPDIFGDD 168
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 320 LFLAGKVEETPKKCKDIIKVAKSLLTELKFASFGEN 427
LFLAG+ E P++ ++ + L ++A FG +
Sbjct: 300 LFLAGRHAEAPQEALQVLDIVLRELPSARYAPFGRS 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,840,725
Number of Sequences: 37544
Number of extensions: 275948
Number of successful extensions: 635
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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