Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5e19
(556 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009) 107 8e-24
SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07) 50 1e-06
SB_49844| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_22349| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_10978| Best HMM Match : Cyclin_N (HMM E-Value=2.7e-06) 36 0.022
SB_21598| Best HMM Match : DUF1642 (HMM E-Value=9.6) 34 0.068
SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9) 29 2.6
SB_27246| Best HMM Match : C2 (HMM E-Value=0.026) 29 3.4
SB_7649| Best HMM Match : PolyA_pol (HMM E-Value=6.4) 27 7.8
>SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)
Length = 392
Score = 107 bits (256), Expect = 8e-24
Identities = 46/67 (68%), Positives = 54/67 (80%)
Frame = +2
Query: 233 VATGVVYFHRFYMFHSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKVAKSLLTELKFA 412
+ATG VYFHRFYM SF+ FPR++T CLFLAGKVEETPKKC+DIIK A SLLT +F
Sbjct: 1 MATGAVYFHRFYMIQSFKNFPRWVTGAACLFLAGKVEETPKKCRDIIKTANSLLTPPQFE 60
Query: 413 SFGENPK 433
+FG +PK
Sbjct: 61 AFGPDPK 67
>SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)
Length = 282
Score = 50.4 bits (115), Expect = 1e-06
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Frame = +2
Query: 182 ARFIIDTGSKMDLGYNTVATGVVYFHRFYMFHSFRTFPRYITACCCLFLAGKVEETP--- 352
+ F+ G +DL +AT V+F RFY +S ++ + A C++LA KVEE
Sbjct: 45 SNFMQSLGEHLDLRQQVIATATVFFKRFYSKNSLKSIDPLLIAPTCVYLASKVEECGAIS 104
Query: 353 -----KKCKDIIKVAKSLLTELKFASFGENPKEEVMTLERILLQTIKFDFQVXHPYGYLL 517
C ++K S +++ + N +V+ E LL+ + + HPY L
Sbjct: 105 NNKLISACSSVVKNKYSYAFQMEQFPYRMN---QVLECEFYLLEMLDCCLIIYHPYRPLT 161
Query: 518 KYAKCL 535
+Y L
Sbjct: 162 QYVSDL 167
>SB_49844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +2
Query: 47 ISVILNKTSASKMPYWYYDKKDLLNTPSFRDGINNDAENRYRKEGARFIIDTGSKMDL-G 223
IS + S S WY+ K+ L N+PS R G++ + E YR++ A I D G ++ +
Sbjct: 16 ISNMAAVNSVSSDERWYFTKEQLQNSPSRRMGMDAERELSYRQQAATLIQDMGQRLSVYP 75
Query: 224 YNTVATGVVYFHRF 265
N V Y+ +F
Sbjct: 76 KNHFQVSVNYYSQF 89
>SB_22349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 35.9 bits (79), Expect = 0.022
Identities = 24/93 (25%), Positives = 41/93 (44%)
Frame = +2
Query: 227 NTVATGVVYFHRFYMFHSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKVAKSLLTELK 406
+ AT + Y RFY+ S P CLF+A KVEE ++ +++ E K
Sbjct: 10 SVTATAITYLKRFYVKTSVMDHPPKEMFLVCLFMACKVEEYNISVENFVQILPRDRRE-K 68
Query: 407 FASFGENPKEEVMTLERILLQTIKFDFQVXHPY 505
F ++ E +L++ + F + HP+
Sbjct: 69 VMDF-------ILAHELLLMERLDFHLTIHHPF 94
>SB_10978| Best HMM Match : Cyclin_N (HMM E-Value=2.7e-06)
Length = 283
Score = 35.9 bits (79), Expect = 0.022
Identities = 24/93 (25%), Positives = 41/93 (44%)
Frame = +2
Query: 227 NTVATGVVYFHRFYMFHSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKVAKSLLTELK 406
+ AT + Y RFY+ S P CLF+A KVEE ++ +++ E K
Sbjct: 77 SVTATAITYLKRFYVKTSVMDHPPKEMFLVCLFMACKVEEYNISVENFVQILPRDRRE-K 135
Query: 407 FASFGENPKEEVMTLERILLQTIKFDFQVXHPY 505
F ++ E +L++ + F + HP+
Sbjct: 136 VMDF-------ILAHELLLMERLDFHLTIHHPF 161
>SB_21598| Best HMM Match : DUF1642 (HMM E-Value=9.6)
Length = 151
Score = 34.3 bits (75), Expect = 0.068
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +2
Query: 299 YITACC---CLFLAGKVEETPKKCKDIIKVAKSLLTELKFASFGENPKEEVMTL 451
YITA C F+AG+ P+KCK++I+V K+ +++ + G P E +++L
Sbjct: 2 YITAACERQTEFVAGQ----PEKCKELIRVVKAWCEGVQWRNTGSKPGEYLLSL 51
>SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 149 NDAENRYRKEGARFIIDTGS 208
ND+ NRYRK G R IDT S
Sbjct: 453 NDSHNRYRKTGHRTRIDTDS 472
>SB_40478| Best HMM Match : RpoE2 (HMM E-Value=1.9)
Length = 219
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -1
Query: 331 RQKQTAASGYVPRKRPERMKHVKTMKINNPCG-NSIIT*VHF-RSCVD 194
R +TA G+VP +P + K + I+ G N++IT H+ RSCV+
Sbjct: 90 RGNETAWLGFVPINKPRASQIAKRLPIDPKTGLNAVIT--HYSRSCVE 135
>SB_27246| Best HMM Match : C2 (HMM E-Value=0.026)
Length = 576
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 8 SMELTYLVTISDNISVILNKTSASKMPYWYYDKKDLLNTPSFRDGI 145
+MEL L+ ++ +++ +AS + Y Y KKD TP + G+
Sbjct: 153 TMELMVLIILAIVAGILIATVAASGVYYAYRTKKDKSATPKGKKGV 198
>SB_7649| Best HMM Match : PolyA_pol (HMM E-Value=6.4)
Length = 318
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 143 SHHGRKAYSTNPFCHNTNKAFWKHLFYSK 57
SHHG YS+ ++ K WK L+ K
Sbjct: 265 SHHGGSTYSSAEDSYDIRKKVWKKLYKPK 293
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,604,732
Number of Sequences: 59808
Number of extensions: 345254
Number of successful extensions: 833
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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