Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc5e19
(556 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical pr... 128 3e-30
L23648-3|AAN63386.1| 438|Caenorhabditis elegans Cyclin t protei... 79 2e-15
L23648-1|AAA28034.1| 468|Caenorhabditis elegans Cyclin t protei... 79 2e-15
L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protei... 73 1e-13
Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical pr... 55 4e-08
AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L prot... 55 4e-08
AF125448-7|AAD12812.2| 302|Caenorhabditis elegans Cyclin c prot... 47 8e-06
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 31 0.56
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 31 0.56
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 31 0.56
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 31 0.56
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 31 0.56
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 31 0.56
Z81117-11|CAC42336.1| 383|Caenorhabditis elegans Hypothetical p... 31 0.74
Z81117-10|CAB03311.1| 384|Caenorhabditis elegans Hypothetical p... 31 0.74
U21282-1|AAA84395.1| 385|Caenorhabditis elegans cyclin B3 protein. 31 0.74
Z71266-5|CAD56593.1| 370|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z71266-4|CAA95843.1| 478|Caenorhabditis elegans Hypothetical pr... 29 2.2
U80848-1|AAB37990.3| 389|Caenorhabditis elegans Hypothetical pr... 29 3.0
AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical ... 28 5.2
Z66513-15|CAA91337.3| 487|Caenorhabditis elegans Hypothetical p... 27 6.9
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr... 27 6.9
U88180-5|AAB42299.1| 340|Caenorhabditis elegans Hypothetical pr... 27 6.9
AL110499-6|CAB57915.2| 487|Caenorhabditis elegans Hypothetical ... 27 6.9
Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 9.1
AF101318-9|AAC69349.1| 350|Caenorhabditis elegans Serpentine re... 27 9.1
>Z83226-1|CAB05724.2| 252|Caenorhabditis elegans Hypothetical
protein F43D2.1 protein.
Length = 252
Score = 128 bits (309), Expect = 3e-30
Identities = 63/148 (42%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Frame = +2
Query: 83 MPYWYYDKKDLLNTPSFRDGINNDAENRYRKEGARFIIDTGSKMDLGYN-TVATGVVYFH 259
M W + + L TPS R G+ + E +R+EG + + + G+ ++ T+ VYFH
Sbjct: 1 MSDWIWPLEALKTTPSIRAGLTKEQELLWRREGIKLLSEVGNALNCKPRPTIGVAAVYFH 60
Query: 260 RFYMFHSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKVAKSLLTELKFASFGENPKEE 439
RFYM HSF++F R +TA CLFLAGKVE+ PKKCKD+ + A + E+ ++ + +N ++
Sbjct: 61 RFYMIHSFQSFSREVTALSCLFLAGKVEDFPKKCKDVCQAAVTHYPEI-YSKY-QNLVDD 118
Query: 440 VMTLERILLQTIKFDFQVXHPYGYLLKY 523
VM LER+LL ++KFD V PY LL Y
Sbjct: 119 VMGLERVLLHSLKFDLHVALPYDALLDY 146
>L23648-3|AAN63386.1| 438|Caenorhabditis elegans Cyclin t protein
1.1, isoform b protein.
Length = 438
Score = 79.0 bits (186), Expect = 2e-15
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Frame = +2
Query: 92 WYYDKKDLLNTPSFRDGINNDAENRYRKEGARFI---ID-----TGSKMDLGYNTVATGV 247
W + K+++ T S ++G++ + E R+ A FI ID KM +G+ +
Sbjct: 20 WLFTKEEMKKTASIQEGMSREEELASRQMAAAFIQEMIDGLNNVKDPKMKIGHTGLCVAH 79
Query: 248 VYFHRFYMFHSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKV--AKSLLTELKFASFG 421
+ HRFY HSF+ + C+FLAGK +E P+K +I V + +L +
Sbjct: 80 THMHRFYYLHSFKKYDYRDVGAACVFLAGKSQECPRKLSHVISVWRERKDRKQLTTETAR 139
Query: 422 ENPKEEVMTLERILLQTIKFDFQVXHPYGYLLKYAK 529
+ ++ LE ++LQTI FD V P+ Y+L K
Sbjct: 140 NEAAQIIVLLESMILQTIAFDLNVHLPHIYVLDIMK 175
>L23648-1|AAA28034.1| 468|Caenorhabditis elegans Cyclin t protein
1.1, isoform a protein.
Length = 468
Score = 79.0 bits (186), Expect = 2e-15
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Frame = +2
Query: 92 WYYDKKDLLNTPSFRDGINNDAENRYRKEGARFI---ID-----TGSKMDLGYNTVATGV 247
W + K+++ T S ++G++ + E R+ A FI ID KM +G+ +
Sbjct: 20 WLFTKEEMKKTASIQEGMSREEELASRQMAAAFIQEMIDGLNNVKDPKMKIGHTGLCVAH 79
Query: 248 VYFHRFYMFHSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKV--AKSLLTELKFASFG 421
+ HRFY HSF+ + C+FLAGK +E P+K +I V + +L +
Sbjct: 80 THMHRFYYLHSFKKYDYRDVGAACVFLAGKSQECPRKLSHVISVWRERKDRKQLTTETAR 139
Query: 422 ENPKEEVMTLERILLQTIKFDFQVXHPYGYLLKYAK 529
+ ++ LE ++LQTI FD V P+ Y+L K
Sbjct: 140 NEAAQIIVLLESMILQTIAFDLNVHLPHIYVLDIMK 175
>L23648-4|AAA28033.2| 555|Caenorhabditis elegans Cyclin t protein
1.2, isoform a protein.
Length = 555
Score = 73.3 bits (172), Expect = 1e-13
Identities = 51/155 (32%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Frame = +2
Query: 92 WYYDKKDLL-NTPSFRDGINNDAENRYRKEGARFIIDTGSKMDLG---YNTVATGVVYFH 259
W K+D+L +TPS R+G+ + E R++G FI D ++ G + F+
Sbjct: 23 WLRKKQDMLADTPSRREGMTYEEELSKRQQGGVFIFDIAMQLTHGKGEHGLSGVAATLFN 82
Query: 260 RFYMFHSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKVAKSLLTELKFASFGENPKEE 439
RF+ HS + A C+FLAGK E+ PKK K ++ + L + K+ + E+
Sbjct: 83 RFFNVHSLKRCDFRDVAAACVFLAGKNEDAPKKLKYVV----TQLWQFKYPHNKQFQSEQ 138
Query: 440 -------VMTL-ERILLQTIKFDFQVXHPYGYLLK 520
V+TL E +LL+TI FD V P+ Y+LK
Sbjct: 139 HFLDQCNVVTLIEDVLLKTISFDINVDLPHQYVLK 173
>Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical
protein C52E4.6a protein.
Length = 480
Score = 54.8 bits (126), Expect = 4e-08
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 20/159 (12%)
Frame = +2
Query: 119 NTPSFRDGINNDAENRYRKEGARFIIDTGSKMDLGYNTVATGVVYFHRFYMFHSFRTFPR 298
N PS DG++ + E+ R G I + L ATG + F R+Y SF +
Sbjct: 89 NPPSLVDGLSKETESELRYLGCELIQQGAILLKLPQTAAATGQILFQRYYYQKSFVRYHF 148
Query: 299 YITACCCLFLAGKVEETPKKCKDIIKVAKSLLTELKFASFGE------------------ 424
CL LA K+EE P++ +++ V L + G
Sbjct: 149 EHAVQACLLLASKIEEEPRRPREVYNVFHRLERLHRLQQSGHDINKETTRGMKPPAVDMN 208
Query: 425 --NPKEEVMTLERILLQTIKFDFQVXHPYGYLLKYAKCL 535
N K+ ++ ER +L T+ F V HP+ ++ Y L
Sbjct: 209 YINTKQHMINSERRILATLGFVVHVKHPHRLIVAYGHTL 247
>AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L
protein.
Length = 480
Score = 54.8 bits (126), Expect = 4e-08
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 20/159 (12%)
Frame = +2
Query: 119 NTPSFRDGINNDAENRYRKEGARFIIDTGSKMDLGYNTVATGVVYFHRFYMFHSFRTFPR 298
N PS DG++ + E+ R G I + L ATG + F R+Y SF +
Sbjct: 89 NPPSLVDGLSKETESELRYLGCELIQQGAILLKLPQTAAATGQILFQRYYYQKSFVRYHF 148
Query: 299 YITACCCLFLAGKVEETPKKCKDIIKVAKSLLTELKFASFGE------------------ 424
CL LA K+EE P++ +++ V L + G
Sbjct: 149 EHAVQACLLLASKIEEEPRRPREVYNVFHRLERLHRLQQSGHDINKETTRGMKPPAVDMN 208
Query: 425 --NPKEEVMTLERILLQTIKFDFQVXHPYGYLLKYAKCL 535
N K+ ++ ER +L T+ F V HP+ ++ Y L
Sbjct: 209 YINTKQHMINSERRILATLGFVVHVKHPHRLIVAYGHTL 247
>AF125448-7|AAD12812.2| 302|Caenorhabditis elegans Cyclin c protein
1 protein.
Length = 302
Score = 47.2 bits (107), Expect = 8e-06
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Frame = +2
Query: 59 LNKTSASKMPYWYYDKKDLLNTPSFRDGINNDAE-NRYRKEGARFIIDTG-----SKMDL 220
LN +S W +DK ++ + I N+ E NR A FI S+ ++
Sbjct: 3 LNFWKSSHCQQWIFDKTEIWKQRAEDMKIYNEEEYNRLNIFWANFITAVATEGAHSQANV 62
Query: 221 G----YNTVATGVVYFHRFYMFHSFRTFPRYITACCCLFLAGKVEE 346
G +AT ++YF RFY+ SFR ++ A LFLA KVEE
Sbjct: 63 GCKLRQQVIATAIIYFKRFYLRQSFRDMCPFLVASTALFLACKVEE 108
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 11 MELTYLVTISDNISVILNKTSASKMPYWYYDKKDLLNTPSFRDGINNDAENRY 169
+ L +T +DNI V +N T A + PY + + + T + D IN+ N++
Sbjct: 36 LNLPQTITCADNIYVYVNSTEADRSPYIFVE----IKTATIHDCINSCFGNQF 84
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 11 MELTYLVTISDNISVILNKTSASKMPYWYYDKKDLLNTPSFRDGINNDAENRY 169
+ L +T +DNI V +N T A + PY + + + T + D IN+ N++
Sbjct: 36 LNLPQTITCADNIYVYVNSTEADRSPYIFVE----IKTATIHDCINSCFGNQF 84
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 11 MELTYLVTISDNISVILNKTSASKMPYWYYDKKDLLNTPSFRDGINNDAENRY 169
+ L +T +DNI V +N T A + PY + + + T + D IN+ N++
Sbjct: 36 LNLPQTITCADNIYVYVNSTEADRSPYIFVE----IKTATIHDCINSCFGNQF 84
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 11 MELTYLVTISDNISVILNKTSASKMPYWYYDKKDLLNTPSFRDGINNDAENRY 169
+ L +T +DNI V +N T A + PY + + + T + D IN+ N++
Sbjct: 36 LNLPQTITCADNIYVYVNSTEADRSPYIFVE----IKTATIHDCINSCFGNQF 84
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 11 MELTYLVTISDNISVILNKTSASKMPYWYYDKKDLLNTPSFRDGINNDAENRY 169
+ L +T +DNI V +N T A + PY + + + T + D IN+ N++
Sbjct: 36 LNLPQTITCADNIYVYVNSTEADRSPYIFVE----IKTATIHDCINSCFGNQF 84
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 31.1 bits (67), Expect = 0.56
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 11 MELTYLVTISDNISVILNKTSASKMPYWYYDKKDLLNTPSFRDGINNDAENRY 169
+ L +T +DNI V +N T A + PY + + + T + D IN+ N++
Sbjct: 36 LNLPQTITCADNIYVYVNSTEADRSPYIFVE----IKTATIHDCINSCFGNQF 84
>Z81117-11|CAC42336.1| 383|Caenorhabditis elegans Hypothetical
protein T06E6.2b protein.
Length = 383
Score = 30.7 bits (66), Expect = 0.74
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = +2
Query: 308 ACCCLFLAGKVEETPKKCKDIIKVAKSLLTELKFASFGENPKEEVMTLERILLQTIKFDF 487
AC +F+A K +E + L+ +L + S ++E++ +ER L T+ +D
Sbjct: 189 ACVAIFIAAKYDER----------SPPLVDDLIYLSGDRFSRDELLAMERELFATVGYDL 238
Query: 488 QVXHPYGYLLKYAKCLKGDXTKL 556
Y YL ++ + + D L
Sbjct: 239 GSPLSYRYLRRFGRVCRVDMKTL 261
>Z81117-10|CAB03311.1| 384|Caenorhabditis elegans Hypothetical
protein T06E6.2a protein.
Length = 384
Score = 30.7 bits (66), Expect = 0.74
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = +2
Query: 308 ACCCLFLAGKVEETPKKCKDIIKVAKSLLTELKFASFGENPKEEVMTLERILLQTIKFDF 487
AC +F+A K +E + L+ +L + S ++E++ +ER L T+ +D
Sbjct: 190 ACVAIFIAAKYDER----------SPPLVDDLIYLSGDRFSRDELLAMERELFATVGYDL 239
Query: 488 QVXHPYGYLLKYAKCLKGDXTKL 556
Y YL ++ + + D L
Sbjct: 240 GSPLSYRYLRRFGRVCRVDMKTL 262
>U21282-1|AAA84395.1| 385|Caenorhabditis elegans cyclin B3 protein.
Length = 385
Score = 30.7 bits (66), Expect = 0.74
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = +2
Query: 308 ACCCLFLAGKVEETPKKCKDIIKVAKSLLTELKFASFGENPKEEVMTLERILLQTIKFDF 487
AC +F+A K +E + L+ +L + S ++E++ +ER L T+ +D
Sbjct: 191 ACVAIFIAAKYDER----------SPPLVDDLIYLSGDRFSRDELLAMERELFATVGYDL 240
Query: 488 QVXHPYGYLLKYAKCLKGDXTKL 556
Y YL ++ + + D L
Sbjct: 241 GSPLSYRYLRRFGRVCRVDMKTL 263
>Z71266-5|CAD56593.1| 370|Caenorhabditis elegans Hypothetical
protein R06C7.5b protein.
Length = 370
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 91 IRHFGST-CFIQNNTDIV*YRH*ISKLHRQY 2
I H G+T CF+Q+N D++ YR I + +++
Sbjct: 101 IIHLGATSCFVQDNADLIAYRDSIDHILKRF 131
>Z71266-4|CAA95843.1| 478|Caenorhabditis elegans Hypothetical
protein R06C7.5a protein.
Length = 478
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -1
Query: 91 IRHFGST-CFIQNNTDIV*YRH*ISKLHRQY 2
I H G+T CF+Q+N D++ YR I + +++
Sbjct: 101 IIHLGATSCFVQDNADLIAYRDSIDHILKRF 131
>U80848-1|AAB37990.3| 389|Caenorhabditis elegans Hypothetical
protein T10H10.3 protein.
Length = 389
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 173 FCNDSQHRCLSHHGRKAYSTNPFCHNTNKAFWKHLF 66
F ++Q + H R+ + +PF H + K WK F
Sbjct: 222 FTTENQPYYVDHANRRTHWVHPFVHESLKPGWKKFF 257
>AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical
protein Y61A9LA.8 protein.
Length = 740
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 29 VTISDNISVILNKTSASKMPYWYYDKKDLLNTPSFRDGINNDAENRYRKE 178
V + D++++ + K++A K W +D D L S + G + E RKE
Sbjct: 50 VQMKDDLNLFIGKSTA-KFVDWLFDLFDRLQNASNKQGETSKKEEDKRKE 98
>Z66513-15|CAA91337.3| 487|Caenorhabditis elegans Hypothetical
protein F54D5.12 protein.
Length = 487
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +2
Query: 344 ETPKKCKDIIKVAKSLLTEL 403
E+ KKC +++K+AKS LTE+
Sbjct: 256 ESFKKCCEVLKLAKSSLTEI 275
>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical
protein T01E8.5 protein.
Length = 1270
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -1
Query: 331 RQKQTAASGYVPRKRPERMKHVKT---MKINNPCGNSIIT*VHFRSCVDYESRSFLSVT 164
R ++S R R R + + MK+N P + +T +R+C Y S +F++ T
Sbjct: 182 RSSSRSSSSSRSRDRSSRARDTSSHTLMKMNKPAKYAFLTDEEYRTCDAYISSAFITQT 240
>Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical
protein T01E8.5 protein.
Length = 1270
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -1
Query: 331 RQKQTAASGYVPRKRPERMKHVKT---MKINNPCGNSIIT*VHFRSCVDYESRSFLSVT 164
R ++S R R R + + MK+N P + +T +R+C Y S +F++ T
Sbjct: 182 RSSSRSSSSSRSRDRSSRARDTSSHTLMKMNKPAKYAFLTDEEYRTCDAYISSAFITQT 240
>U88180-5|AAB42299.1| 340|Caenorhabditis elegans Hypothetical
protein T27A3.6 protein.
Length = 340
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 89 YWYYDKKDLLNTPSFRDGINNDAE 160
YW +D+K+ +N FR I N+++
Sbjct: 67 YWSFDEKEAINIDQFRQRILNESK 90
>AL110499-6|CAB57915.2| 487|Caenorhabditis elegans Hypothetical
protein F54D5.12 protein.
Length = 487
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +2
Query: 344 ETPKKCKDIIKVAKSLLTEL 403
E+ KKC +++K+AKS LTE+
Sbjct: 256 ESFKKCCEVLKLAKSSLTEI 275
>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical
protein ZK524.4 protein.
Length = 1016
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 260 RFYMFHSFRTFPRYITACCCLFLAGKVEETPKKCKDI 370
RFY H F + PR + CC L+ + E K +
Sbjct: 422 RFYPLHDFVSSPRSASRCCSAQLSRQNSEEAMSLKSL 458
>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical
protein ZK524.4 protein.
Length = 1016
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 260 RFYMFHSFRTFPRYITACCCLFLAGKVEETPKKCKDI 370
RFY H F + PR + CC L+ + E K +
Sbjct: 422 RFYPLHDFVSSPRSASRCCSAQLSRQNSEEAMSLKSL 458
>AF101318-9|AAC69349.1| 350|Caenorhabditis elegans Serpentine
receptor, class t protein56 protein.
Length = 350
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/57 (28%), Positives = 22/57 (38%)
Frame = +2
Query: 230 TVATGVVYFHRFYMFHSFRTFPRYITACCCLFLAGKVEETPKKCKDIIKVAKSLLTE 400
T GV Y + F FH+ +T L L + E +K KSLL +
Sbjct: 213 TEQEGVTYSNNFLYFHNISAAVLLVTVYTSLCLVWRFREVKNFSAQAMKFQKSLLLQ 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,561,180
Number of Sequences: 27780
Number of extensions: 265605
Number of successful extensions: 813
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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